ZFIN is now using GRCz12tu for Genomic Data
Gene
sox5
- ID
- ZDB-GENE-000607-13
- Name
- SRY-box transcription factor 5
- Symbol
- sox5 Nomenclature History
- Previous Names
-
- sox5b (1)
- id:ibd5067
- sb:eu456
- si:dkey-215a8.1
- Type
- protein_coding_gene
- Location
- Chr: 4 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell fate commitment; positive regulation of chondrocyte differentiation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within cell differentiation. Predicted to be active in nucleus. Is expressed in several structures, including brain; digestive system; fin; forebrain neural keel; and gonad. Orthologous to human SOX5 (SRY-box transcription factor 5).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 17 figures from 9 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- eu456 (14 images)
Wild Type Expression Summary
- All Phenotype Data
- 1 Figure from Nagao et al., 2018
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| Lamb-Shaffer syndrome | 616803 |
Domain, Family, and Site Summary
Domain Details Per Protein
- Genome Browsers
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers