ZFIN is now using GRCz12tu for Genomic Data
Gene
col13a1
- ID
- ZDB-GENE-030131-1874
- Name
- collagen, type XIII, alpha 1
- Symbol
- col13a1 Nomenclature History
- Previous Names
-
- fb83c11
- im:7150829
- wu:fb83c11 (1)
- Type
- protein_coding_gene
- Location
- Chr: 13 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to be located in membrane. Predicted to be part of collagen trimer. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 19. Orthologous to human COL13A1 (collagen type XIII alpha 1 chain).
- Genome Resources
-
- Alliance (1)
- Gene:323154 (1)
- Note
- None
- Comparative Information
-
- All Expression Data
- 2 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- IMAGE:7150829 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| congenital myasthenic syndrome 19 | Alliance | Myasthenic syndrome, congenital, 19 | 616720 |
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Collagen and Collagen-like Structural Proteins | Collagen triple helix repeat |
|---|---|---|---|---|
| UniProtKB:A0A8M9PB14 | InterPro | 750 | ||
| UniProtKB:A0A8M9PB31 | InterPro | 739 | ||
| UniProtKB:A0A8M9PB52 | InterPro | 736 | ||
| UniProtKB:A0A8M9PB74 | InterPro | 727 | ||
| UniProtKB:A0A8M9PMN0 | InterPro | 738 | ||
| UniProtKB:A0A8M9PMP1 | InterPro | 735 | ||
| UniProtKB:A0A8M9PMQ1 | InterPro | 724 | ||
| UniProtKB:A0A8M9PTQ4 | InterPro | 748 | ||
| UniProtKB:A0A8M9PTR5 | InterPro | 737 | ||
| UniProtKB:A0A8M9PTT8 | InterPro | 734 | ||
| UniProtKB:A0A8M9PTV4 | InterPro | 697 | ||
| UniProtKB:A0A8M9Q0V2 | InterPro | 750 | ||
| UniProtKB:A0A8M9Q0Y8 | InterPro | 739 | ||
| UniProtKB:A0A8M9Q0Z9 | InterPro | 736 | ||
| UniProtKB:A0A8M9Q109 | InterPro | 728 | ||
| UniProtKB:A0A8M9Q436 | InterPro | 751 | ||
| UniProtKB:A0A8M9Q4D2 | InterPro | 741 | ||
| UniProtKB:A0A8M9Q4F2 | InterPro | 736 | ||
| UniProtKB:A0A8M9Q4S6 | InterPro | 729 | ||
| UniProtKB:A0AB32T3Q1 | InterPro | 616 | ||
| UniProtKB:A0AB32TMN3 | InterPro | 733 |
- Genome Browsers
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers
- Comparative Orthology
- Alliance