ZFIN is now using GRCz12tu for Genomic Data
Gene
sf1
- ID
- ZDB-GENE-030131-2492
- Name
- splicing factor 1
- Symbol
- sf1 Nomenclature History
- Previous Names
-
- wu:fc09f06
- znf162 (1)
- Type
- protein_coding_gene
- Location
- Chr: 7 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable mRNA binding activity. Acts upstream of or within retina development in camera-type eye. Predicted to be part of spliceosomal complex. Predicted to be active in nucleus. Orthologous to human SF1 (splicing factor 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 2 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- eu807 (1 image)
Wild Type Expression Summary
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR001878 | Zinc finger, CCHC-type |
| Domain | IPR004087 | K Homology domain |
| Domain | IPR032570 | Splicing factor 1, helix-hairpin domain |
| Domain | IPR055256 | KHDC4/BBP-like, KH-domain type I |
| Family | IPR045071 | KH domain-containing BBP-like |
| Homologous_superfamily | IPR036612 | K Homology domain, type 1 superfamily |
| Homologous_superfamily | IPR047086 | Splicing factor 1, helix-hairpin domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | KHDC4/BBP-like, KH-domain type I | KH domain-containing BBP-like | K Homology domain | K Homology domain, type 1 superfamily | Splicing factor 1, helix-hairpin domain | Splicing factor 1, helix-hairpin domain superfamily | Zinc finger, CCHC-type |
|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A0R4IBT0 | InterPro | 663 | |||||||
| UniProtKB:A0A8M9Q1R8 | InterPro | 591 | |||||||
| UniProtKB:A0A8M3B3Z3 | InterPro | 476 | |||||||
| UniProtKB:A0A8M3AU14 | InterPro | 637 | |||||||
| UniProtKB:Q6TNQ8 | InterPro | 565 |
- Genome Browsers
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers