ZFIN is now using GRCz12tu for Genomic Data
Gene
gdpd5b
- ID
- ZDB-GENE-030131-6028
- Name
- glycerophosphodiester phosphodiesterase domain containing 5b
- Symbol
- gdpd5b Nomenclature History
- Previous Names
-
- fi31c04
- si:dkey-52l18.5
- wu:fi31c04
- Type
- protein_coding_gene
- Location
- Chr: 15 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable glycerophosphodiester phosphodiesterase activity. Acts upstream of or within axis elongation. Located in plasma membrane. Orthologous to human GDPD5 (glycerophosphodiester phosphodiesterase domain containing 5).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- 2 figures from van Veen et al., 2017
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Glycerophosphodiester phosphodiesterase domain | PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily |
|---|---|---|---|---|
| UniProtKB:A0A2R8Q763 | InterPro | 579 | ||
| UniProtKB:A0A8M2B4R1 | InterPro | 584 | ||
| UniProtKB:A0A8M9PCF6 | InterPro | 480 | ||
| UniProtKB:A0AB32T362 | InterPro | 502 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| aberrant processed transcript |
gdpd5b-203
(1)
|
Ensembl | 5,086 nt | ||
| aberrant processed transcript |
gdpd5b-205
(1)
|
Ensembl | 739 nt | ||
| mRNA |
gdpd5b-201
(1)
|
Ensembl | 2,341 nt | ||
| mRNA |
gdpd5b-202
(1)
|
Ensembl | 474 nt | ||
| mRNA |
gdpd5b-207
(1)
|
Ensembl | 2,710 nt | ||
| mRNA |
gdpd5b-208
(1)
|
Ensembl | 2,656 nt | ||
| mRNA |
gdpd5b-209
(1)
|
Ensembl | 2,401 nt | ||
| ncRNA |
gdpd5b-002
(1)
|
Ensembl | 588 nt | ||
| ncRNA |
gdpd5b-004
(1)
|
Ensembl | 495 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers