ZFIN is now using GRCz12tu for Genomic Data
Gene
larp6a
- ID
- ZDB-GENE-030131-6403
- Name
- La ribonucleoprotein 6, translational regulator a
- Symbol
- larp6a Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 18 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Enables RNA binding activity. Acts upstream of or within somitogenesis. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; mesenchymal cell; post-vent region; segmental plate; and trunk. Orthologous to human LARP6 (La ribonucleoprotein 6, translational regulator).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 8 figures from 3 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- eu362 (5 images)
Wild Type Expression Summary
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR006630 | La-type HTH domain |
| Domain | IPR024642 | SUZ-C domain |
| Domain | IPR034880 | La-related protein 6, RNA recognition motif |
| Family | IPR002344 | Lupus La protein |
| Family | IPR045180 | La domain containing protein |
| Homologous_superfamily | IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| Homologous_superfamily | IPR035979 | RNA-binding domain superfamily |
| Homologous_superfamily | IPR036388 | Winged helix-like DNA-binding domain superfamily |
| Homologous_superfamily | IPR036390 | Winged helix DNA-binding domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | La domain containing protein | La-related protein 6, RNA recognition motif | La-type HTH domain | Lupus La protein | Nucleotide-binding alpha-beta plait domain superfamily | RNA-binding domain superfamily | SUZ-C domain | Winged helix DNA-binding domain superfamily | Winged helix-like DNA-binding domain superfamily |
|---|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:Q6PHD4 | InterPro | 485 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
larp6a-201
(1)
|
Ensembl | 1,877 nt | ||
| mRNA |
larp6a-202
(1)
|
Ensembl | 2,245 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers