ZFIN is now using GRCz12tu for Genomic Data
Gene

bin1b

ID
ZDB-GENE-030425-1
Name
bridging integrator 1b
Symbol
bin1b Nomenclature History
Previous Names
  • bin1
  • cb57 (1)
  • im:7137547 (1)
  • si:ch211-114n24.7
  • zgc:86701
Type
protein_coding_gene
Location
Chr: 6 Mapping Details/Browsers
Genome Assembly
GRCz12tu
Annotation Status
Current
Description
Predicted to enable phospholipid binding activity and tau protein binding activity. Acts upstream of or within T-tubule organization and cardiac muscle contraction. Predicted to be located in several cellular components, including T-tubule; axon; and endosome. Predicted to be active in plasma membrane and synaptic vesicle. Is expressed in adaxial cell; cardiovascular system; musculature system; pectoral fin bud; and somite. Used to study centronuclear myopathy 2. Human ortholog(s) of this gene implicated in breast carcinoma; centronuclear myopathy 2; and prostate adenocarcinoma. Orthologous to human BIN1 (bridging integrator 1).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
8 figures from 2 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
8 figures from 2 publications
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With bin1b Human Ortholog
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
centronuclear myopathy 2 Alliance Centronuclear myopathy 2 255200
Associated With bin1b Via Experimental Models
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR001452 SH3 domain
Domain IPR004148 BAR domain
Family IPR003005 Amphiphysin
Homologous_superfamily IPR027267 AH/BAR domain superfamily
Homologous_superfamily IPR036028 SH3-like domain superfamily
Domain Details Per Protein
Protein Additional Resources Length AH/BAR domain superfamily Amphiphysin BAR domain SH3 domain SH3-like domain superfamily
UniProtKB:A0A8M3AT31 InterPro 543
UniProtKB:A0A8M3B348 InterPro 533
UniProtKB:A0A8M9QFB8 InterPro 407
UniProtKB:A0A8M9QAA8 InterPro 396
UniProtKB:A0A8M3AT25 InterPro 564
UniProtKB:A0A8M3B066 InterPro 451
UniProtKB:A0A8M3BA55 InterPro 545
UniProtKB:A0A2R8QMI5 InterPro 576
UniProtKB:F1QRX4 InterPro 364
UniProtKB:A0A8M3B064 InterPro 565
UniProtKB:A0A8M3AT30 InterPro 440
UniProtKB:A0A8M9PZM7 InterPro 568
UniProtKB:A0AB32TPQ5 InterPro 553
UniProtKB:A0AC58JR35 InterPro 545
UniProtKB:A0AC58JR45 InterPro 512
UniProtKB:A0AC58JR47 InterPro 501
UniProtKB:A0AC58JR48 InterPro 531
UniProtKB:A0AC58JR49 InterPro 524
UniProtKB:A0AC58JR50 InterPro 523
UniProtKB:A0AC58JR51 InterPro 447
UniProtKB:A0AC58JR53 InterPro 525
UniProtKB:A0AC58JR54 InterPro 532
UniProtKB:A0AC58JR55 InterPro 448
UniProtKB:A0AC58JR56 InterPro 534
UniProtKB:A0AC58JR57 InterPro 557
UniProtKB:A0AC58JR58 InterPro 436
UniProtKB:A0AC58JR59 InterPro 409
UniProtKB:A0AC58JR60 InterPro 408
UniProtKB:A0AC58JR61 InterPro 520
UniProtKB:A0AC58JR62 InterPro 420
UniProtKB:A0AC58JR63 InterPro 353
UniProtKB:A0AC58JR64 InterPro 522
UniProtKB:A0AC58JR65 InterPro 396
UniProtKB:A0AC58JR66 InterPro 535
UniProtKB:A0AC58JR67 InterPro 428
UniProtKB:A0AC58JR68 InterPro 395
UniProtKB:A0AC58JR71 InterPro 439
UniProtKB:A0AC58JR72 InterPro 451
UniProtKB:A0AC58JR75 InterPro 407
UniProtKB:A0AC58JR76 InterPro 397
UniProtKB:A0AC58JR78 InterPro 440
UniProtKB:A0AC58JR91 InterPro 376
UniProtKB:A0AC58JR98 InterPro 299
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
lincRNA si:ch211-114n24.7-001 (1) Ensembl 2,053 nt
mRNA bin1b-201 (1) Ensembl 1,878 nt
mRNA bin1b-202 (1) Ensembl 867 nt
mRNA bin1b-203 (1) Ensembl 756 nt
mRNA bin1b-204 (1) Ensembl 777 nt
mRNA bin1b-205 (1) Ensembl 2,520 nt
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
Constructs
Marker Relationships
Sequences
Genome Browsers
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations