ZFIN is now using GRCz12tu for Genomic Data
Gene

vamp4

ID
ZDB-GENE-040625-92
Name
vesicle-associated membrane protein 4
Symbol
vamp4 Nomenclature History
Previous Names
  • zgc:73166
  • zgc:86855
Type
protein_coding_gene
Location
Chr: 20 Mapping Details/Browsers
Genome Assembly
GRCz12tu
Annotation Status
Current
Description
Predicted to be involved in endocytic recycling and regulation of Golgi to plasma membrane protein transport. Predicted to be part of SNARE complex. Predicted to be active in presynaptic endosome membrane and trans-Golgi network. Is expressed in central nervous system. Orthologous to human VAMP4 (vesicle associated membrane protein 4).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
4 figures from Thisse et al., 2004
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With vamp4 Human Ortholog
No data available
Associated With vamp4 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR042855 v-SNARE, coiled-coil homology domain
Family IPR001388 Synaptobrevin-like
Family IPR042887 Vesicle-associated membrane protein 4
Domain Details Per Protein
Protein Additional Resources Length Synaptobrevin-like Vesicle-associated membrane protein 4 v-SNARE, coiled-coil homology domain
UniProtKB:F6P4N7 InterPro 153
UniProtKB:Q6IQB0 InterPro 140
UniProtKB:A0ACD6B587 InterPro 140
UniProtKB:A0AC36JWK6 InterPro 123
UniProtKB:A0AC36JYB5 InterPro 140
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA vamp4-201 (1)
Ensembl
Ensembl 1,632 nt
ZFIN BLAST
mRNA vamp4-202 (1)
Ensembl
Ensembl 507 nt
ZFIN BLAST
mRNA vamp4-205 (1)
Ensembl
Ensembl 681 nt
ZFIN BLAST
mRNA vamp4-206 (1)
Ensembl
Ensembl 2,655 nt
ZFIN BLAST
mRNA vamp4-207 (1)
Ensembl
Ensembl 1,639 nt
ZFIN BLAST
ncRNA vamp4-003 (1)
Ensembl
Ensembl 501 nt
ZFIN BLAST
ncRNA vamp4-004 (1)
Ensembl
Ensembl 505 nt
ZFIN BLAST
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Genome Browsers
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations
Your Input Welcome
We welcome your input and comments. Please use this form to recommend updates to the information in ZFIN. We appreciate as much detail as possible and references as appropriate. We will review your comments promptly.
Please check the highlighted fields and try again.
Thank you for submitting comments. Your input has been emailed to ZFIN curators who may contact you if additional information is required.
Oops. Something went wrong. Please try again later.