ZFIN is now using GRCz12tu for Genomic Data
Gene
trim25l
- ID
- ZDB-GENE-040914-87
- Name
- tripartite motif containing 25, like
- Symbol
- trim25l Nomenclature History
- Previous Names
- None
- Type
- protein_coding_gene
- Location
- Chr: 6 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable ligase activity and zinc ion binding activity. Predicted to act upstream of or within innate immune response. Predicted to be located in cytoplasm.
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Conserved_site | IPR017907 | Zinc finger, RING-type, conserved site |
| Domain | IPR000315 | B-box-type zinc finger |
| Domain | IPR001841 | Zinc finger, RING-type |
| Domain | IPR001870 | B30.2/SPRY domain |
| Domain | IPR003877 | SPRY domain |
| Domain | IPR003879 | Butyrophylin-like, SPRY domain |
| Domain | IPR006574 | SPRY-associated |
| Domain | IPR027370 | Zinc finger, RING-type, eukaryotic |
| Domain | IPR058030 | TRIM8/14/16/25/29/45/65, coiled-coil region |
| Family | IPR051051 | E3 ubiquitin-protein ligase TRIM/RNF |
| Homologous_superfamily | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| Homologous_superfamily | IPR013320 | Concanavalin A-like lectin/glucanase domain superfamily |
| Homologous_superfamily | IPR043136 | B30.2/SPRY domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | B30.2/SPRY domain | B30.2/SPRY domain superfamily | B-box-type zinc finger | Butyrophylin-like, SPRY domain | Concanavalin A-like lectin/glucanase domain superfamily | E3 ubiquitin-protein ligase TRIM/RNF | SPRY-associated | SPRY domain | TRIM8/14/16/25/29/45/65, coiled-coil region | Zinc finger, RING/FYVE/PHD-type | Zinc finger, RING-type | Zinc finger, RING-type, conserved site | Zinc finger, RING-type, eukaryotic |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M1PSG4 | InterPro | 859 | |||||||||||||
| UniProtKB:F1R871 | InterPro | 860 | |||||||||||||
| UniProtKB:A0A8M2BJF1 | InterPro | 859 | |||||||||||||
| UniProtKB:A0AC58JT48 | InterPro | 856 | |||||||||||||
| UniProtKB:A0AC58JT55 | InterPro | 862 | |||||||||||||
| UniProtKB:A0AC58JT58 | InterPro | 863 | |||||||||||||
| UniProtKB:A0AC58JT62 | InterPro | 839 | |||||||||||||
| UniProtKB:A0AC58JT65 | InterPro | 836 | |||||||||||||
| UniProtKB:A0AC58JT68 | InterPro | 841 | |||||||||||||
| UniProtKB:A0AC58JT69 | InterPro | 842 | |||||||||||||
| UniProtKB:A0AC58JT72 | InterPro | 855 | |||||||||||||
| UniProtKB:A0AC58JT73 | InterPro | 835 | |||||||||||||
| UniProtKB:A0AC58JT79 | InterPro | 862 | |||||||||||||
| UniProtKB:A0AC58JT87 | InterPro | 835 | |||||||||||||
| UniProtKB:A0ACD6B6I9 | InterPro | 857 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
trim25l-201
(1)
|
Ensembl | 3,222 nt | ||
| mRNA |
trim25l-202
(1)
|
Ensembl | 3,150 nt | ||
| mRNA |
trim25l-203
(1)
|
Ensembl | 3,183 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers