ZFIN is now using GRCz12tu for Genomic Data
Gene
ssrp1b
- ID
- ZDB-GENE-041008-209
- Name
- structure specific recognition protein 1b
- Symbol
- ssrp1b Nomenclature History
- Previous Names
-
- im:7140964
- Type
- protein_coding_gene
- Location
- Chr: 1 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable histone binding activity and nucleosome binding activity. Predicted to be involved in regulation of chromatin organization. Predicted to act upstream of or within DNA repair and DNA replication. Predicted to be located in chromosome and nucleolus. Predicted to be part of FACT complex. Is expressed in ventral wall of dorsal aorta. Orthologous to human SSRP1 (structure specific recognition protein 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 3 figures from 3 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- IMAGE:7140964 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR009071 | High mobility group box domain |
| Domain | IPR013719 | Histone chaperone RTT106/FACT complex subunit SPT16-like, middle domain |
| Domain | IPR024954 | SSRP1, dimerization domain |
| Domain | IPR035417 | FACT complex subunit SSRP1/POB3, N-terminal PH domain |
| Domain | IPR048985 | FACT complex subunit SSRP1, C-terminal domain |
| Domain | IPR048993 | FACT complex subunit SSRP1-like, first PH domain |
| Family | IPR000969 | FACT complex subunit SSRP1/POB3 |
| Family | IPR050454 | RTT106/SSRP1 Histone Chaperone/FACT Complex |
| Homologous_superfamily | IPR011993 | PH-like domain superfamily |
| Homologous_superfamily | IPR036910 | High mobility group box domain superfamily |
| Homologous_superfamily | IPR038167 | SSRP1 domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | FACT complex subunit SSRP1, C-terminal domain | FACT complex subunit SSRP1-like, first PH domain | FACT complex subunit SSRP1/POB3 | FACT complex subunit SSRP1/POB3, N-terminal PH domain | High mobility group box domain | High mobility group box domain superfamily | Histone chaperone RTT106/FACT complex subunit SPT16-like, middle domain | PH-like domain superfamily | RTT106/SSRP1 Histone Chaperone/FACT Complex | SSRP1, dimerization domain | SSRP1 domain superfamily |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:F6NLJ7 | InterPro | 703 | |||||||||||
| UniProtKB:A0A8M9PMB1 | InterPro | 705 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
ssrp1b-201
(1)
|
Ensembl | 2,052 nt | ||
| mRNA |
ssrp1b-202
(1)
|
Ensembl | 2,621 nt | ||
| mRNA |
ssrp1b-203
(1)
|
Ensembl | 1,687 nt | ||
| mRNA |
ssrp1b-204
(1)
|
Ensembl | 2,097 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers