ZFIN is now using GRCz12tu for Genomic Data
Gene
gtf3c2
- ID
- ZDB-GENE-041014-349
- Name
- general transcription factor IIIC, polypeptide 2, beta
- Symbol
- gtf3c2 Nomenclature History
- Previous Names
-
- si:ch211-245h14.3
- Type
- protein_coding_gene
- Location
- Chr: 20 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable RNA polymerase III general transcription initiation factor activity. Predicted to contribute to RNA polymerase III type 1 promoter sequence-specific DNA binding activity. Predicted to be involved in 5S class rRNA transcription by RNA polymerase III and transcription initiation at RNA polymerase III promoter. Predicted to be part of transcription factor TFIIIC complex. Predicted to be active in nucleus. Orthologous to human GTF3C2 (general transcription factor IIIC subunit 2).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Conserved_site | IPR019775 | WD40 repeat, conserved site |
| Family | IPR052416 | General transcription factor 3C component |
| Homologous_superfamily | IPR015943 | WD40/YVTN repeat-like-containing domain superfamily |
| Homologous_superfamily | IPR036322 | WD40-repeat-containing domain superfamily |
| Repeat | IPR001680 | WD40 repeat |
Domain Details Per Protein
| Protein | Additional Resources | Length | General transcription factor 3C component | WD40 repeat | WD40 repeat, conserved site | WD40-repeat-containing domain superfamily | WD40/YVTN repeat-like-containing domain superfamily |
|---|---|---|---|---|---|---|---|
| UniProtKB:F1R215 | InterPro | 853 | |||||
| UniProtKB:Q5RHA2 | InterPro | 830 | |||||
| UniProtKB:A0AC58I403 | InterPro | 853 | |||||
| UniProtKB:A0AC58I408 | InterPro | 853 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
gtf3c2-201
(1)
|
Ensembl | 3,253 nt | ||
| mRNA |
gtf3c2-202
(1)
|
Ensembl | 2,692 nt | ||
| mRNA |
gtf3c2-203
(1)
|
Ensembl | 650 nt | ||
| mRNA |
gtf3c2-204
(1)
|
Ensembl | 751 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers