ZFIN is now using GRCz12tu for Genomic Data
Gene
col7a1l
- ID
- ZDB-GENE-030131-9861
- Name
- collagen type VII alpha 1-like
- Symbol
- col7a1l Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 4 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to be part of collagen trimer. Is expressed in several structures, including central nervous system; ectoderm; endoderm; integument; and pharynx.
- Genome Resources
- Note
-
col7a1l is represented by four partial gene models in Ensembl GRCz11
- Comparative Information
-
- All Expression Data
- 10 figures from 5 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- cb483 (13 images)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
No data available
Domain Details Per Protein
| Protein | Additional Resources | Length |
|---|---|---|
| UniProtKB:A0AB32TT82 | InterPro | 2724 |
| UniProtKB:A0AB32TTW0 | InterPro | 2707 |
| UniProtKB:A0AC58J9Q3 | InterPro | 2144 |
| UniProtKB:A0AC58J9Q9 | InterPro | 2161 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
col7a1l-202
(1)
|
Ensembl | 5,167 nt | ||
| mRNA |
si:dkey-117n7.2-201
(1)
|
Ensembl | 503 nt | ||
| mRNA |
si:dkey-117n7.3-201
(1)
|
Ensembl | 89 nt | ||
| mRNA |
si:dkey-117n7.4-201
(1)
|
Ensembl | 1,593 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers