ZFIN is now using GRCz12tu for Genomic Data

Gene

ppfibp1b

ID

ZDB-GENE-060503-47

Name

PPFIA binding protein 1b

Symbol

ppfibp1b Nomenclature History

Previous Names

si:dkey-103i16.1

Type

protein_coding_gene

Location

Chr: 18 Mapping Details/Browsers

Genome Assembly

GRCz12tu

Annotation Status

Current

Description

Predicted to be involved in neuromuscular junction development. Predicted to be located in cytosol. Predicted to be active in presynaptic active zone. Orthologous to human PPFIBP1 (PPFIB scaffold protein 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With ppfibp1b Human Ortholog

Disease Ontology Term	Multi-Species Data	OMIM Term	OMIM Phenotype ID
		Neurodevelopmental disorder with seizures, microcephaly, and brain abnormalities	620024

Associated With ppfibp1b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR001660	Sterile alpha motif domain
Domain	IPR058914	Liprin-beta-1/2, coiled-coil domain
Homologous_superfamily	IPR013761	Sterile alpha motif/pointed domain superfamily

Domain Details Per Protein

Protein	Additional Resources	Length
UniProtKB:Q1LUM4	InterPro	1013
UniProtKB:A0A8M3B2U3	InterPro	962
UniProtKB:A0A8M9PFH0	InterPro	982
UniProtKB:A0A8M9PQ97	InterPro	973
UniProtKB:A0A2R8QNZ1	InterPro	993
UniProtKB:B7ZVC4	InterPro	951
UniProtKB:A0AC58HTK9	InterPro	942
UniProtKB:A0AC58HTL6	InterPro	931
UniProtKB:A0AC58HTL9	InterPro	962
UniProtKB:A0AC58HTM1	InterPro	993
UniProtKB:A0ACD6B5C1	InterPro	951
UniProtKB:A0ACD6B7X8	InterPro	993

Transcripts

Genome Browsers

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	ppfibp1b-201 (1) Ensembl	Ensembl	2,962 nt	Select Tool ZFIN BLAST
mRNA	ppfibp1b-202 (1) Ensembl	Ensembl	960 nt	Select Tool ZFIN BLAST
mRNA	ppfibp1b-203 (1) Ensembl	Ensembl	4,086 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Genome Browsers

NCBI Map Viewer

ZFIN

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations