Gene

pcgf6

ID

ZDB-GENE-060526-178

Name

polycomb group ring finger 6

Symbol

pcgf6 Nomenclature History

Previous Names

im:7144322
si:ch211-67n3.7

Type

protein_coding_gene

Location

Chr: 13 Mapping Details/Browsers

Description

Predicted to enable metal ion binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of PRC1 complex. Is expressed in gonad; nervous system; and pharyngeal arch. Orthologous to human PCGF6 (polycomb group ring finger 6).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

5 figures from 3 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:7144322 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With pcgf6 Human Ortholog

No data available

Associated With pcgf6 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR017907	Zinc finger, RING-type, conserved site
Domain	IPR001841	Zinc finger, RING-type
Domain	IPR032443	RAWUL domain
Domain	IPR038037	Polycomb group RING finger protein 6, C3HC4-type RING finger
Domain	IPR046979	Polycomb group RING finger protein 6, RAWUL
Family	IPR051507	Polycomb group RING finger
Homologous_superfamily	IPR013083	Zinc finger, RING/FYVE/PHD-type
Homologous_superfamily	IPR029071	Ubiquitin-like domain superfamily

Domain Details Per Protein

Protein	Additional Resources	Length	Polycomb group RING finger	Polycomb group RING finger protein 6, C3HC4-type RING finger	Polycomb group RING finger protein 6, RAWUL	RAWUL domain	Ubiquitin-like domain superfamily	Zinc finger, RING/FYVE/PHD-type	Zinc finger, RING-type	Zinc finger, RING-type, conserved site
UniProtKB:A2ATX3	InterPro	277

Transcripts

Genome Browsers

NCBI

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	pcgf6-201 (1) Ensembl	Ensembl		1,724 nt	Select Tool ZFIN BLAST
mRNA	pcgf6-202 (1) Ensembl	Ensembl		491 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations