ZFIN is now using GRCz12tu for Genomic Data

Gene

arvcfb

ID

ZDB-GENE-060526-60

Name

ARVCF delta catenin family member b

Symbol

arvcfb Nomenclature History

Previous Names

si:ch211-173n20.1 (1)
wu:fc11a08

Type

protein_coding_gene

Location

Chr: 5 Mapping Details/Browsers

Genome Assembly

GRCz12tu

Annotation Status

Current

Description

Predicted to enable cadherin binding activity. Predicted to be involved in cell-cell adhesion. Predicted to be located in anchoring junction. Predicted to be active in several cellular components, including adherens junction; nucleus; and plasma membrane. Human ortholog(s) of this gene implicated in DiGeorge syndrome. Orthologous to human ARVCF (ARVCF delta catenin family member).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

2 figures from Hsu et al., 2012

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With arvcfb Human Ortholog

No data available

Associated With arvcfb Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Family	IPR028435	Plakophilin/Delta catenin
Homologous_superfamily	IPR011989	Armadillo-like helical
Homologous_superfamily	IPR016024	Armadillo-type fold
Repeat	IPR000225	Armadillo

Domain Details Per Protein

Protein	Additional Resources	Length
UniProtKB:A0A8M3ASI4	InterPro	1009
UniProtKB:A0A8M3ASI2	InterPro	1048
UniProtKB:A0A8M9PXY3	InterPro	966
UniProtKB:A0A8M9QE79	InterPro	998
UniProtKB:A2BGY1	InterPro	986
UniProtKB:A0A8M3AZP7	InterPro	984
UniProtKB:A0A8M9PKF3	InterPro	1041
UniProtKB:A0A8M3B9P1	InterPro	1016
UniProtKB:A0A8M3ASE0	InterPro	1030
UniProtKB:A0A8M3AZP1	InterPro	1032
UniProtKB:A0A8M3B2J5	InterPro	1038
UniProtKB:A0A8M3B2J8	InterPro	1008
UniProtKB:A0A8M9Q3M5	InterPro	1002
UniProtKB:A0A8M9PXX9	InterPro	1014
UniProtKB:A0A8M9Q8X2	InterPro	992
UniProtKB:A0A8M3ASE4	InterPro	938
UniProtKB:A0AB32TNC3	InterPro	986
UniProtKB:A0AB32TPG5	InterPro	904
UniProtKB:A0AB32TPN2	InterPro	920
UniProtKB:A0AB32TR23	InterPro	886
UniProtKB:A0AB32TRP5	InterPro	974
UniProtKB:A0AB32TS06	InterPro	1048
UniProtKB:A0AB32TTK9	InterPro	1020
UniProtKB:A0AB32TUK2	InterPro	1002
UniProtKB:A0AB32TVC5	InterPro	992
UniProtKB:A0AB32TVI0	InterPro	1014
UniProtKB:A0AB32TWS1	InterPro	1002
UniProtKB:A0AC58JJX8	InterPro	1025
UniProtKB:A0AC58JJY2	InterPro	1000
UniProtKB:A0AC58JJY4	InterPro	988
UniProtKB:A0AC58JJY5	InterPro	990
UniProtKB:A0AC58JJY6	InterPro	968
UniProtKB:A0AC58JJY8	InterPro	981
UniProtKB:A0AC58JJZ2	InterPro	982
UniProtKB:A0AC58JJZ3	InterPro	954
UniProtKB:A0AC58JJZ4	InterPro	975
UniProtKB:A0AC58JJZ5	InterPro	943
UniProtKB:A0AC58JJZ6	InterPro	943
UniProtKB:A0AC58JJZ7	InterPro	951
UniProtKB:A0AC58JJZ8	InterPro	949
UniProtKB:A0AC58JJZ9	InterPro	944
UniProtKB:A0AC58JK00	InterPro	929
UniProtKB:A0AC58JK01	InterPro	922
UniProtKB:A0AC58JK05	InterPro	958
UniProtKB:A0AC58JK06	InterPro	956
UniProtKB:A0AC58JK07	InterPro	935
UniProtKB:A0AC58JK08	InterPro	928
UniProtKB:A0AC58JK09	InterPro	904
UniProtKB:A0AC58JK10	InterPro	911
UniProtKB:A0AC58JK11	InterPro	910
UniProtKB:A0AC58JK12	InterPro	878
UniProtKB:A0AC58JK13	InterPro	911
UniProtKB:A0AC58JK14	InterPro	887
UniProtKB:A0AC58JK16	InterPro	912
UniProtKB:A0AC58JK17	InterPro	898
UniProtKB:A0AC58JK18	InterPro	961
UniProtKB:A0AC58JK19	InterPro	984
UniProtKB:A0AC58JK20	InterPro	917
UniProtKB:A0AC58JK21	InterPro	917
UniProtKB:A0AC58JK22	InterPro	890
UniProtKB:A0AC58JK23	InterPro	880
UniProtKB:A0AC58JK26	InterPro	918
UniProtKB:A0AC58JK31	InterPro	962
UniProtKB:A0AC58JK38	InterPro	936
UniProtKB:A0AC58JK48	InterPro	896
UniProtKB:A0AC58JK50	InterPro	848
UniProtKB:A0AC58JK52	InterPro	920
UniProtKB:A0AC58JK69	InterPro	872

Transcripts

Genome Browsers

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	arvcfb-201 (1) Ensembl	Ensembl	2,961 nt	Select Tool ZFIN BLAST
mRNA	arvcfb-202 (1) Ensembl	Ensembl	575 nt	Select Tool ZFIN BLAST
mRNA	arvcfb-203 (1) Ensembl	Ensembl	679 nt	Select Tool ZFIN BLAST
mRNA	arvcfb-204 (1) Ensembl	Ensembl	9,165 nt	Select Tool ZFIN BLAST
mRNA	arvcfb-206 (1) Ensembl	Ensembl	774 nt	Select Tool ZFIN BLAST
mRNA	arvcfb-207 (1) Ensembl	Ensembl	763 nt	Select Tool ZFIN BLAST
mRNA	arvcfb-208 (1) Ensembl	Ensembl	2,915 nt	Select Tool ZFIN BLAST
mRNA	arvcfb-209 (1) Ensembl	Ensembl	2,808 nt	Select Tool ZFIN BLAST
ncRNA	arvcfb-003 (1) Ensembl	Ensembl	610 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Genome Browsers

NCBI Map Viewer

ZFIN

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations