ZFIN is now using GRCz12tu for Genomic Data
Gene

armc9

ID
ZDB-GENE-100922-67
Name
armadillo repeat containing 9
Symbol
armc9 Nomenclature History
Previous Names
  • si:ch1073-404h7.1
Type
protein_coding_gene
Location
Chr: 22 Mapping Details/Browsers
Genome Assembly
GRCz12tu
Annotation Status
Current
Description
Acts upstream of or within cilium assembly. Predicted to be located in cell projection; cytoplasm; and cytoskeleton. Predicted to be active in centriole; ciliary basal body; and ciliary tip. Is expressed in central nervous system and retina. Used to study Joubert syndrome.
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
2 figures from Van De Weghe et al., 2017
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
3 figures from 2 publications
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With armc9 Human Ortholog
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
Joubert syndrome 30 Alliance Joubert syndrome 30 617622
Associated With armc9 Via Experimental Models
Human Disease Fish Conditions Citations
Joubert syndrome armc9zh502/zh502 standard conditions Latour et al., 2020
Joubert syndrome armc9zh503/zh503 standard conditions Latour et al., 2020
Joubert syndrome armc9zh504/zh504 standard conditions Latour et al., 2020
Joubert syndrome armc9zh505/zh505 standard conditions Latour et al., 2020
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
No data available
Domain Details Per Protein
Protein Additional Resources Length
UniProtKB:A0AB32TC76 InterPro 829
UniProtKB:A0AC58IHJ9 InterPro 817
UniProtKB:A0AC58IHK0 InterPro 874
UniProtKB:A0AC58IHK7 InterPro 886
UniProtKB:A0AC58IHL0 InterPro 829
UniProtKB:A0AC58IHL6 InterPro 609
UniProtKB:A0AC58IHM4 InterPro 597
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA armc9-201 (1)
Ensembl
Ensembl 5,306 nt
ZFIN BLAST
mRNA armc9-202 (1)
Ensembl
Ensembl 1,965 nt
ZFIN BLAST
mRNA armc9-204 (1)
Ensembl
Ensembl 5,270 nt
ZFIN BLAST
ncRNA armc9-002 (1)
Ensembl
Ensembl 537 nt
ZFIN BLAST
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Genome Browsers
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations
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