hdac5

ID

ZDB-GENE-121219-3

Name

histone deacetylase 5

Symbol

hdac5 Nomenclature History

Previous Names

None

Type

protein_coding_gene

Location

Chr: 3 Mapping Details/Browsers

Genome Assembly

GRCz12tu

Annotation Status

Current

Description

Predicted to enable histone deacetylase activity. Acts upstream of or within pronephros morphogenesis. Predicted to be located in nucleus. Predicted to be part of histone deacetylase complex. Orthologous to human HDAC5 (histone deacetylase 5).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

2 figures from 2 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: 3 figures from Rothschild et al., 2018
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With hdac5 Human Ortholog

No data available

Associated With hdac5 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR023801	Histone deacetylase domain
Domain	IPR024643	Histone deacetylase, glutamine rich N-terminal domain
Family	IPR046949	Histone deacetylase 4/5/7/9
Homologous_superfamily	IPR023696	Ureohydrolase domain superfamily
Homologous_superfamily	IPR037138	Histone deacetylase domain superfamily

Domain Details Per Protein

Protein	Additional Resources	Length
UniProtKB:A0A8M9PXQ8	InterPro	1068
UniProtKB:A0A8M3B885	InterPro	1125
UniProtKB:A0A8M9P8E1	InterPro	1067
UniProtKB:A0A8M3AQU0	InterPro	1085
UniProtKB:A0A8M3AQH0	InterPro	1127
UniProtKB:E7FH14	InterPro	1128
UniProtKB:A0A8M9PJD7	InterPro	1065