ZFIN is now using GRCz12tu for Genomic Data
Gene

ldb1a

ID
ZDB-GENE-990415-138
Name
LIM domain binding 1a
Symbol
ldb1a Nomenclature History
Previous Names
  • ldb4 (1)
Type
protein_coding_gene
Location
Chr: 13 Mapping Details/Browsers
Genome Assembly
GRCz12tu
Annotation Status
Current
Description
Enables LIM domain binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II; nervous system development; and positive regulation of transcription by RNA polymerase II. Located in nucleus. Is expressed in brain; eye; gill; heart; and pleuroperitoneal region. Orthologous to human LDB1 (LIM domain binding 1).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
5 figures from 5 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With ldb1a Human Ortholog
No data available
Associated With ldb1a Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR041363 LIM interaction domain
Family IPR029005 LIM-domain binding protein/SEUSS
Domain Details Per Protein
Protein Additional Resources Length LIM-domain binding protein/SEUSS LIM interaction domain
UniProtKB:F1R491 InterPro 352
UniProtKB:A0A8M3BEM2 InterPro 416
UniProtKB:A0A8M3AZ27 InterPro 354
UniProtKB:A0A8M3AZ24 InterPro 413
UniProtKB:A0A8M2B3N6 InterPro 381
UniProtKB:A0A8M2B3I2 InterPro 380
UniProtKB:A0A8M2B2T8 InterPro 376
UniProtKB:O73712 InterPro 374
UniProtKB:A0A2R8RV37 InterPro 352
UniProtKB:A0A8M6Z3Q7 InterPro 410
UniProtKB:A0A8M3BEM6 InterPro 357
UniProtKB:A0A8M3AZ48 InterPro 359
UniProtKB:A0A8M3B801 InterPro 411
UniProtKB:A0A8M6Z275 InterPro 412
UniProtKB:A0A8M9PXM7 InterPro 414
UniProtKB:A0A8M6Z9I1 InterPro 353
UniProtKB:A0A8M6Z933 InterPro 417
UniProtKB:O73715 InterPro 374
UniProtKB:A0A8M2B326 InterPro 418
UniProtKB:A0AB32TYV1 InterPro 417
UniProtKB:A0AB32TZK5 InterPro 411
UniProtKB:A0AB32U136 InterPro 412
UniProtKB:A0AB32U176 InterPro 357
UniProtKB:A0AB32U1M0 InterPro 410
UniProtKB:A0AB32U1Z9 InterPro 354
UniProtKB:A0AB32U271 InterPro 416
UniProtKB:A0AB32U3D5 InterPro 413
UniProtKB:A0AB32U3U2 InterPro 353
UniProtKB:A0AB32U439 InterPro 314
UniProtKB:A0AB32U4W8 InterPro 359
UniProtKB:A0AB32U5Q7 InterPro 316
UniProtKB:A0AC58H035 InterPro 417
UniProtKB:A0AC58H037 InterPro 416
UniProtKB:A0AC58H045 InterPro 413
UniProtKB:A0AC58H047 InterPro 413
UniProtKB:A0AC58H049 InterPro 375
UniProtKB:A0AC58H050 InterPro 375
UniProtKB:A0AC58H051 InterPro 374
UniProtKB:A0AC58H052 InterPro 410
UniProtKB:A0AC58H053 InterPro 376
UniProtKB:A0AC58H054 InterPro 411
UniProtKB:A0AC58H055 InterPro 410
UniProtKB:A0AC58H056 InterPro 411
UniProtKB:A0AC58H057 InterPro 412
UniProtKB:A0AC58H058 InterPro 373
UniProtKB:A0AC58H059 InterPro 354
UniProtKB:A0AC58H060 InterPro 353
UniProtKB:A0AC58H061 InterPro 356
UniProtKB:A0AC58H062 InterPro 373
UniProtKB:A0AC58H063 InterPro 352
UniProtKB:A0AC58H068 InterPro 316
UniProtKB:A0AC58H069 InterPro 314
UniProtKB:A0AC58H070 InterPro 315
UniProtKB:A0AC58H072 InterPro 315
UniProtKB:A0AC58H073 InterPro 317
UniProtKB:A0AC58H074 InterPro 351
UniProtKB:A0AC58H075 InterPro 317
UniProtKB:A0AC58H080 InterPro 351
UniProtKB:A0AC58H081 InterPro 352
UniProtKB:A0AC58H082 InterPro 351
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA ldb1a-201 (1) Ensembl 2,276 nt
mRNA ldb1a-203 (1) Ensembl 2,986 nt
mRNA ldb1a-204 (1) Ensembl 5,819 nt
ncRNA ldb1a-003 (1) Ensembl 419 nt
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Genome Browsers
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations