ZFIN ID: ZDB-GENE-990714-15

Mapping Details

Gene Name: DNA (cytosine-5-)-methyltransferase 1
Symbol: dnmt1
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 3 57,137,395 - 57,153,394 GRCz12tu
NCBI Map Viewer 3 57,137,395 - 57,153,394 GRCz12tu
Ensembl 3 54,591,218 - 54,607,166 GRCz11
NCBI Map Viewer 3 54,591,218 - 54,607,216 GRCz11
UCSC 3 - GRCz11
Vega 3 54,336,616 - 54,352,585 GRCv10
Mapped Clones containing dnmt1
CH73-160J1 Chr: 3 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
rj794 3 54,597,721 GRCz11 DIRECT Liu et al., 2015
s872 3 54,591,701 - 54,591,702 GRCz11 DIRECT Anderson et al., 2009
s904 3 54,600,854 GRCz11 DIRECT Anderson et al., 2009
sa16282 3 57,148,107 GRCz12tu DIRECT Sealy et al., 2025
3 54,601,929 GRCz11 DIRECT Busch-Nentwich et al., 2013
3 54,347,327 GRCz10 DIRECT Busch-Nentwich et al., 2013
3 55,453,601 Zv9 DIRECT Busch-Nentwich et al., 2013
sa20150 3 57,144,111 GRCz12tu DIRECT Sealy et al., 2025
3 54,597,933 GRCz11 DIRECT Busch-Nentwich et al., 2013
3 54,343,331 GRCz10 DIRECT Busch-Nentwich et al., 2013
3 55,449,605 Zv9 DIRECT Busch-Nentwich et al., 2013
sa40171 3 57,142,550 GRCz12tu DIRECT Sealy et al., 2025
3 54,596,372 GRCz11 DIRECT Busch-Nentwich et al., 2013
3 54,341,770 GRCz10 DIRECT Busch-Nentwich et al., 2013
3 55,448,044 Zv9 DIRECT Busch-Nentwich et al., 2013
sa40172 3 57,146,698 GRCz12tu DIRECT Sealy et al., 2025
3 54,600,520 GRCz11 DIRECT Busch-Nentwich et al., 2013
3 54,345,918 GRCz10 DIRECT Busch-Nentwich et al., 2013
3 55,452,192 Zv9 DIRECT Busch-Nentwich et al., 2013
sa40173 3 57,149,125 GRCz12tu DIRECT Sealy et al., 2025
3 54,602,947 GRCz11 DIRECT Busch-Nentwich et al., 2013
3 54,348,345 GRCz10 DIRECT Busch-Nentwich et al., 2013
3 55,454,619 Zv9 DIRECT Busch-Nentwich et al., 2013
sa40174 3 57,149,126 GRCz12tu DIRECT Sealy et al., 2025
3 54,602,948 GRCz11 DIRECT Busch-Nentwich et al., 2013
3 54,348,346 GRCz10 DIRECT Busch-Nentwich et al., 2013
3 55,454,620 Zv9 DIRECT Busch-Nentwich et al., 2013
s872 3 GRCz11 GENERAL_LOAD load data [singleton]
s904 3 GRCz11 GENERAL_LOAD load data [singleton]
pd1093 3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
rj794 3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
s872 3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
3 GRCz11 OTHER_MAPPING linkagesDirectMem1
3 GRCz11 OTHER_MAPPING linkagesDirectMem2
s904 3 GRCz11 OTHER_MAPPING linkagesDirectMem2
3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
3 GRCz11 OTHER_MAPPING linkagesDirectMem1
sa16282 3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa20150 3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa40171 3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa40172 3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa40173 3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa40174 3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
t25501 3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
3 91.8 cM dnmt1 Heat Shock (HS) Woods, Ian G. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
ppan GENE 3 Anderson et al., 2009 Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using SSLP and RFLP markers.
s872 Feature 3 Anderson et al., 2009 Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using SSLP and RFLP markers.
angptl6 GENE 3 Anderson et al., 2009 Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using SSLP and RFLP markers.
s1pr2 GENE 3 Anderson et al., 2009 Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using SSLP and RFLP markers.
s904 Feature 3 Anderson et al., 2009 Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using SSLP and RFLP markers.
eif3g GENE 3 Anderson et al., 2009 Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using SSLP and RFLP markers.
s1pr2 GENE 3 Kupperman et al., 2000 Kupperman et al. (Nature 406, 192-195, 2000) mapped edg5 (mil) 16.5 cM distal  ...
z3725 SSLP 3 16.5 cM Kupperman et al., 2000 Kupperman et al. (Nature 406, 192-195, 2000) mapped edg5 (mil) 16.5 cM distal  ...

OTHER MAPPING INFORMATION
Genomic Feature s872 is an allele of dnmt1
Chr 3 Anderson et al., 2009 Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using  ...
Genomic Feature s872 is an allele of dnmt1
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