ZFIN ID: ZDB-GENE-030131-574

Mapping Details

Gene Name: intraflagellar transport 88 homolog
Symbol: ift88
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 9 22,981,075 - 22,999,348 GRCz12tu
NCBI Map Viewer 9 22,981,075 - 22,999,348 GRCz12tu
Ensembl 9 21,365,633 - 21,383,489 GRCz11
NCBI Map Viewer 9 21,365,630 - 21,383,612 GRCz11
UCSC 9 - GRCz11
Vega 9 21,554,764 - 21,572,620 GRCv10
Mapped Clones containing ift88
DKEY-51D17 Chr: 9 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
sa7628 9 22,995,974 GRCz12tu DIRECT Sealy et al., 2025
9 21,380,238 GRCz11 DIRECT Busch-Nentwich et al., 2013
9 21,569,369 GRCz10 DIRECT Busch-Nentwich et al., 2013
9 22,413,583 Zv9 DIRECT Busch-Nentwich et al., 2013
sa8799 9 22,994,993 GRCz12tu DIRECT Sealy et al., 2025
9 21,379,257 GRCz11 DIRECT Busch-Nentwich et al., 2013
9 21,568,388 GRCz10 DIRECT Busch-Nentwich et al., 2013
9 22,412,602 Zv9 DIRECT Busch-Nentwich et al., 2013
sa18944 9 22,994,993 GRCz12tu DIRECT Sealy et al., 2025
9 21,379,257 GRCz11 DIRECT Busch-Nentwich et al., 2013
9 21,568,388 GRCz10 DIRECT Busch-Nentwich et al., 2013
9 22,412,602 Zv9 DIRECT Busch-Nentwich et al., 2013
sa27381 9 22,996,021 GRCz12tu DIRECT Sealy et al., 2025
9 21,380,285 GRCz11 DIRECT Busch-Nentwich et al., 2013
9 21,569,416 GRCz10 DIRECT Busch-Nentwich et al., 2013
9 22,413,630 Zv9 DIRECT Busch-Nentwich et al., 2013
sa41401 9 22,996,308 GRCz12tu DIRECT Sealy et al., 2025
9 21,380,572 GRCz11 DIRECT Busch-Nentwich et al., 2013
9 21,569,703 GRCz10 DIRECT Busch-Nentwich et al., 2013
9 22,413,917 Zv9 DIRECT Busch-Nentwich et al., 2013
tz288 9 21,379,262 GRCz11 DIRECT ZFIN Curated Data
9 GRCz11 GENERAL_LOAD load data [singleton]
ift88_unspecified 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa7628 9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa8799 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa18944 9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa27381 9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa41401 9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
tz288 13 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
9 GRCz11 OTHER_MAPPING paneledMarkersDirect
9 GRCz11 OTHER_MAPPING linkagesDirectMem2
9 GRCz11 OTHER_MAPPING linkagesDirectMem1
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
9 GRCz11 OTHER_MAPPING directMappedMarker

GENETIC MAPPING PANELS: No data available

OTHER MAPPING INFORMATION
Markers Encoded by ift88
fb37b11 Ambiguous Details
zah8127 Chr: 9 Details
Genomic Feature tz288 is an allele of ift88
Chr Location Mapped As Panel Mapped By Scoring
9 50.1 cM tz288 Boston MGH Cross (MGH) Geisler, Robert Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
Genomic Feature tz288 is an allele of ift88
Marker Type Chr Distance Publication / Person Comments
z3124 SSLP 9 Bahadori et al., 2003 Bahadori et al. (2002., European journal of Neuroscience 18:1377-1386) report the mapping of ovl to LG 9. At the time of mapping ovl was mapped 50.2 cM from the top of LG 9 between the markers z3124 and z6430.
z6430 SSLP 9 Bahadori et al., 2003 Bahadori et al. (2002., European journal of Neuroscience 18:1377-1386) report the mapping of ovl to LG 9. At the time of mapping ovl was mapped 50.2 cM from the top of LG 9 between the markers z3124 and z6430.
z5080 SSLP 9 Tsujikawa et al., 2004 Tsujikawa and Malicki, Neuron 42:703-716 (2004) mapped oval allele tz288b to  ...
z17326 SSLP 9 Tsujikawa et al., 2004 Tsujikawa and Malicki, Neuron 42:703-716 (2004) mapped oval allele tz288b to  ...
Genomic Feature tz288 is an allele of ift88
Chr 9 Bahadori et al., 2003 Bahadori et al. (2002., European journal of Neuroscience 18:1377-1386) report the mapping of  ...
Chr 9 Tsujikawa et al., 2004 Tsujikawa and Malicki, Neuron 42:703-716 (2004) mapped oval allele tz288b to the centromeric region  ...
Genomic Feature sa18944 is an allele of ift88
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