ZFIN ID: ZDB-GENE-080530-2

Mapping Details

Gene Name:	VPS39 subunit of HOPS complex
Symbol:	vps39

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN JBrowse	17	50,076,501 - 50,110,236	GRCz11
Ensembl	17	50,076,501 - 50,110,236	GRCz11
Vega	17	49,997,432 - 50,031,167	GRCv10
NCBI Map Viewer	17	50,073,970 - 50,113,486	GRCz11
UCSC	17	-	GRCz11

Mapped Clones containing vps39
CH1073-372I3	Chr: 17 Details
CH73-240M14	Chr: 17 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Citations
sa9171	17	50,097,145	GRCz11	Busch-Nentwich et al., 2013
	17	50,018,076	GRCz10	Busch-Nentwich et al., 2013
	17	50,627,259	Zv9	Busch-Nentwich et al., 2013
sa9687	17	50,103,359	GRCz11	Busch-Nentwich et al., 2013
	17	50,024,290	GRCz10	Busch-Nentwich et al., 2013
	17	50,633,473	Zv9	Busch-Nentwich et al., 2013
sa14550	17	50,084,285	GRCz11	Busch-Nentwich et al., 2013
	17	50,005,216	GRCz10	Busch-Nentwich et al., 2013
	17	50,614,399	Zv9	Busch-Nentwich et al., 2013
sa18429	17	50,100,192	GRCz11	Busch-Nentwich et al., 2013
	17	50,021,123	GRCz10	Busch-Nentwich et al., 2013
	17	50,630,306	Zv9	Busch-Nentwich et al., 2013
t20290	17	50,084,354	GRCz11	Schonthaler et al., 2008
sa9171	17		GRCz11
	17		GRCz11
sa9687	17		GRCz11
	17		GRCz11
sa14550	17		GRCz11
	17		GRCz11
sa18429	17		GRCz11
	17		GRCz11
t20290	17		GRCz11
	17		GRCz11

GENETIC MAPPING PANELS: No data available

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
z4053	SSLP	17	8.6 cM	Schonthaler et al., 2008	Schonthaler, et al. (2008. Development 135(2):387-399.) reports mapping vps39 ...
z9692	SSLP	17	1.4 cM	Schonthaler et al., 2008	Schonthaler, et al. (2008. Development 135(2):387-399.) reports mapping vps39 ...
fc27c07	EST	17		Schonthaler et al., 2008	Schonthaler, et al. (2008. Development 135(2):387-399.) reports mapping vps39 ...

OTHER MAPPING INFORMATION: No data available

Genomic Feature sa9171 is an allele of vps39