ZFIN ID: ZDB-GENE-990415-109

Mapping Details

Gene Name: homeobox B9a
Symbol: hoxb9a
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 3 22,417,279 - 22,422,364 GRCz12tu
NCBI Map Viewer 3 22,417,279 - 22,422,364 GRCz12tu
Ensembl 3 23,677,351 - 23,682,436 GRCz11
NCBI Map Viewer 3 23,677,351 - 23,682,436 GRCz11
UCSC 3 - GRCz11
Vega 3 23,546,803 - 23,551,888 GRCv10
Mapped Clones containing hoxb9a
CH211-72A16 Chr: 3 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
e2217 3 22,417,652 - 22,417,655 GRCz12tu DIRECT Moriyama et al., 2025
sa14877 3 22,417,833 GRCz12tu DIRECT Sealy et al., 2025
3 23,677,905 GRCz11 DIRECT Busch-Nentwich et al., 2013
3 23,547,357 GRCz10 DIRECT Busch-Nentwich et al., 2013
3 23,969,146 Zv9 DIRECT Busch-Nentwich et al., 2013
sa17045 3 22,417,944 GRCz12tu DIRECT Sealy et al., 2025
3 23,678,016 GRCz11 DIRECT Busch-Nentwich et al., 2013
3 23,547,468 GRCz10 DIRECT Busch-Nentwich et al., 2013
3 23,969,257 Zv9 DIRECT Busch-Nentwich et al., 2013
sa31325 3 22,420,568 GRCz12tu DIRECT Sealy et al., 2025
3 23,680,640 GRCz11 DIRECT Busch-Nentwich et al., 2013
3 23,550,092 GRCz10 DIRECT Busch-Nentwich et al., 2013
3 23,971,881 Zv9 DIRECT Busch-Nentwich et al., 2013
la015133Tg 3 23,972,323 - 23,972,333 Zv9 ZFIN_Zv9 BurgessLin
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa14877 3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa17045 3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa31325 2 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
3 181.81 cR hoxb9a Loeb/NIH/5000/4000 (LN54) Johnson, Stephen L. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
hoxb8a GENE 3 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report eve1, hoxb10a, hoxb9a, hoxb8a, hoxb7a, hoxb6a, hoxb5a, hoxb4a, hoxb3a, hoxb2a, and hoxb1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG03.
hoxb5a GENE 3 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report eve1, hoxb10a, hoxb9a, hoxb8a, hoxb7a, hoxb6a, hoxb5a, hoxb4a, hoxb3a, hoxb2a, and hoxb1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG03.
hoxb4a GENE 3 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report eve1, hoxb10a, hoxb9a, hoxb8a, hoxb7a, hoxb6a, hoxb5a, hoxb4a, hoxb3a, hoxb2a, and hoxb1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG03.
eve1 GENE 3 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report eve1, hoxb10a, hoxb9a, hoxb8a, hoxb7a, hoxb6a, hoxb5a, hoxb4a, hoxb3a, hoxb2a, and hoxb1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG03.
hoxb2a GENE 3 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report eve1, hoxb10a, hoxb9a, hoxb8a, hoxb7a, hoxb6a, hoxb5a, hoxb4a, hoxb3a, hoxb2a, and hoxb1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG03.
hoxb6a GENE 3 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report eve1, hoxb10a, hoxb9a, hoxb8a, hoxb7a, hoxb6a, hoxb5a, hoxb4a, hoxb3a, hoxb2a, and hoxb1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG03.
hoxb1a GENE 3 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report eve1, hoxb10a, hoxb9a, hoxb8a, hoxb7a, hoxb6a, hoxb5a, hoxb4a, hoxb3a, hoxb2a, and hoxb1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG03.
hoxb10a GENE 3 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report eve1, hoxb10a, hoxb9a, hoxb8a, hoxb7a, hoxb6a, hoxb5a, hoxb4a, hoxb3a, hoxb2a, and hoxb1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG03.
hoxb7a GENE 3 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report eve1, hoxb10a, hoxb9a, hoxb8a, hoxb7a, hoxb6a, hoxb5a, hoxb4a, hoxb3a, hoxb2a, and hoxb1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG03.
hoxb3a GENE 3 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report eve1, hoxb10a, hoxb9a, hoxb8a, hoxb7a, hoxb6a, hoxb5a, hoxb4a, hoxb3a, hoxb2a, and hoxb1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG03.
dlx4a GENE 3 Sumanas et al., 2001 Sumanas et al (Genesis 30:114-118, 2001) mapped the fzd2 gene to the marker  ...
z22516 SSLP 3 Sumanas et al., 2001 Sumanas et al (Genesis 30:114-118, 2001) mapped the fzd2 gene to the marker  ...
fzd2 GENE 3 Sumanas et al., 2001 Sumanas et al (Genesis 30:114-118, 2001) mapped the fzd2 gene to the marker  ...

OTHER MAPPING INFORMATION
Chr 3 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report eve1,  ...
Chr 3 Sumanas et al., 2001 Sumanas et al (Genesis 30:114-118, 2001) mapped the fzd2 gene to the marker Z22516, between the  ...
Markers Encoded by hoxb9a
fc06b03 Chr: 2 Details
Genomic Feature e2217 is an allele of hoxb9a
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