ZFIN ID: ZDB-GENE-020905-1

ZFIN ID: ZDB-GENE-020905-1

Mapping Details

Gene Name:	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1
Symbol:	atp2a1

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	3	24,881,604 - 24,891,048	GRCz12tu
NCBI Map Viewer	3	24,881,604 - 24,891,048	GRCz12tu
Ensembl	3	26,081,343 - 26,157,066	GRCz11
NCBI Map Viewer	3	26,145,034 - 26,154,478	GRCz11
UCSC	3	Based on NM_001441427	GRCz11
UCSC	3	Based on NM_001441426	GRCz11
UCSC	3	Based on NM_001007029	GRCz11
Vega	3	25,950,472 - 26,026,195	GRCv10

Mapped Clones containing atp2a1
CH211-11K18	Chr: 3 Details
CH73-46H18	Chr: 3 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	Citations
dta5	3	26,152,109	GRCz11	DIRECT	Olson et al., 2010
mi25i	3	26,147,472	GRCz11	DIRECT	Hirata et al., 2004
mi289a	3	26,153,429	GRCz11	DIRECT	Hirata et al., 2004
sa10632	3	24,889,853	GRCz12tu	DIRECT	Sealy et al., 2025
	3	26,153,283	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	3	26,022,412	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	3	26,881,824	Zv9	DIRECT	Busch-Nentwich et al., 2013
sa16659	3	24,888,234	GRCz12tu	DIRECT	Sealy et al., 2025
	3	26,151,664	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	3	26,020,793	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	3	26,883,443	Zv9	DIRECT	Busch-Nentwich et al., 2013
sa17743	3	24,888,764	GRCz12tu	DIRECT	Sealy et al., 2025
	3	26,152,194	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	3	26,021,323	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	3	26,882,913	Zv9	DIRECT	Busch-Nentwich et al., 2013
tq206	3	26,152,955	GRCz11	DIRECT	Hirata et al., 2004
dta5	3		GRCz11	OTHER_MAPPING	ZFIN Curated Data
mi25i	3		GRCz11	OTHER_MAPPING	ZFIN Curated Data
mi289a	3		GRCz11	OTHER_MAPPING	ZFIN Curated Data
tc249a	3		GRCz11	OTHER_MAPPING	ZFIN Curated Data
ti284a	3		GRCz11	OTHER_MAPPING	ZFIN Curated Data
tm286	3		GRCz11	OTHER_MAPPING	ZFIN Curated Data
tn218b	3		GRCz11	OTHER_MAPPING	ZFIN Curated Data
tp72x	3		GRCz11	OTHER_MAPPING	ZFIN Curated Data
tq206	3		GRCz11	OTHER_MAPPING	ZFIN Curated Data
ty20	3		GRCz11	OTHER_MAPPING	ZFIN Curated Data

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
3	46.5 cM	atp2a1	Heat Shock (HS)	Woods, Ian G.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person
ntn1b	GENE	3	4.3 cR	Hirata et al., 2004
z4161	SSLP	3		Hirata et al., 2004
tq206	Feature	3		Hirata et al., 2004

Genomic Feature tq206 is an allele of atp2a1