ZFIN ID: ZDB-GENE-020129-1

Mapping Details

Gene Name: calcium channel, voltage-dependent, L type, alpha 1C subunit
Symbol: cacna1c
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 4 20,904,022 - 21,075,241 GRCz12tu
NCBI Map Viewer 4 20,904,022 - 21,075,241 GRCz12tu
Ensembl 4 20,318,127 - 20,474,972 GRCz11
NCBI Map Viewer 4 20,308,987 - 20,480,303 GRCz11
UCSC 4 - GRCz11
Vega 4 20,597,152 - 20,753,997 GRCv10
Mapped Clones containing cacna1c
CH211-87P6 Chr: 4 Details
DKEY-65M5 Chr: 4 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
a366 4 20,372,569 - 20,372,571 GRCz11 DIRECT Zebrafish Nomenclature Committee
4 20,372,569 - 20,372,571 GRCz11 DIRECT Zebrafish Nomenclature Committee
4 20,372,569 - 20,372,571 GRCz11 DIRECT Thyme et al., 2019
biz102 4 20,372,424 - 20,372,428 GRCz11 DIRECT Pluimer et al., 2023
sa6050 4 21,031,052 GRCz12tu DIRECT Sealy et al., 2025
4 20,436,120 GRCz11 DIRECT Busch-Nentwich et al., 2013
4 20,715,145 GRCz10 DIRECT Busch-Nentwich et al., 2013
4 19,371,810 Zv9 DIRECT Busch-Nentwich et al., 2013
sa6943 4 21,041,878 GRCz12tu DIRECT Sealy et al., 2025
4 20,446,938 GRCz11 DIRECT Busch-Nentwich et al., 2013
4 20,725,963 GRCz10 DIRECT Busch-Nentwich et al., 2013
4 19,382,628 Zv9 DIRECT Busch-Nentwich et al., 2013
sa10930 4 21,030,977 GRCz12tu DIRECT Sealy et al., 2025
4 20,436,045 GRCz11 DIRECT Busch-Nentwich et al., 2013
4 20,715,070 GRCz10 DIRECT Busch-Nentwich et al., 2013
4 19,371,735 Zv9 DIRECT Busch-Nentwich et al., 2013
sa15296 4 21,059,882 GRCz12tu DIRECT Sealy et al., 2025
4 20,464,942 GRCz11 DIRECT Busch-Nentwich et al., 2013
4 20,743,967 GRCz10 DIRECT Busch-Nentwich et al., 2013
4 19,400,632 Zv9 DIRECT Busch-Nentwich et al., 2013
sa38439 4 21,046,952 GRCz12tu DIRECT Sealy et al., 2025
4 20,452,012 GRCz11 DIRECT Busch-Nentwich et al., 2013
4 20,731,037 GRCz10 DIRECT Busch-Nentwich et al., 2013
4 19,387,702 Zv9 DIRECT Busch-Nentwich et al., 2013
sa40287 4 21,042,893 GRCz12tu DIRECT Sealy et al., 2025
4 20,447,953 GRCz11 DIRECT Busch-Nentwich et al., 2013
4 20,726,978 GRCz10 DIRECT Busch-Nentwich et al., 2013
4 19,383,643 Zv9 DIRECT Busch-Nentwich et al., 2013
sa44588 4 21,042,355 GRCz12tu DIRECT Sealy et al., 2025
4 20,447,415 GRCz11 DIRECT Busch-Nentwich et al., 2013
4 20,726,440 GRCz10 DIRECT Busch-Nentwich et al., 2013
4 19,383,105 Zv9 DIRECT Busch-Nentwich et al., 2013
la015364Tg 4 19,361,020 - 19,361,030 Zv9 ZFIN_Zv9 BurgessLin
a366 4 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
4 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
biz102 4 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
4 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
la015364Tg 4 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
4 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
m231 4 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
4 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
m379 4 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
4 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
m458 4 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
4 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa6050 4 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
4 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa6943 4 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
4 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa10930 4 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
4 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa15296 4 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
4 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa38439 4 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
4 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa40287 4 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
4 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa44588 4 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
4 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
uab449 4 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
4 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse

GENETIC MAPPING PANELS: No data available
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
z11566 SSLP 4 Rottbauer et al., 2001 Using bulked segregant analysis and finer genetic mapping, Rottbauer, et al. (2001. Dev Cell 1:265-275.) report mapping cacna1c to LG04 in the ~0.6cM interval between z11657 and z11566. A physical map of this region was generated using YACs and BACs.
z11657 SSLP 4 Rottbauer et al., 2001 Using bulked segregant analysis and finer genetic mapping, Rottbauer, et al. (2001. Dev Cell 1:265-275.) report mapping cacna1c to LG04 in the ~0.6cM interval between z11657 and z11566. A physical map of this region was generated using YACs and BACs.

OTHER MAPPING INFORMATION
Chr 4 Rottbauer et al., 2001 Using bulked segregant analysis and finer genetic mapping, Rottbauer, et al. (2001. Dev Cell  ...
Genomic Feature m231 is an allele of cacna1c
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