ZFIN ID: ZDB-GENE-000822-2

Mapping Details

Gene Name: homeobox C1a
Symbol: hoxc1a
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 23 39,276,804 - 39,282,162 GRCz12tu
NCBI Map Viewer 23 39,276,804 - 39,282,162 GRCz12tu
Ensembl 23 36,178,104 - 36,190,988 GRCz11
NCBI Map Viewer 23 36,178,104 - 36,183,497 GRCz11
UCSC 23 - GRCz11
Vega 23 36,079,301 - 36,092,185 GRCv10
Mapped Clones containing hoxc1a
DKEY-81P22 Chr: 23 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
sa24386 23 39,282,061 GRCz12tu DIRECT Sealy et al., 2025
23 36,183,396 GRCz11 DIRECT Busch-Nentwich et al., 2013
23 36,084,593 GRCz10 DIRECT Busch-Nentwich et al., 2013
23 36,234,940 Zv9 DIRECT Busch-Nentwich et al., 2013
sa37766 23 39,281,817 GRCz12tu DIRECT Sealy et al., 2025
23 36,183,152 GRCz11 DIRECT Busch-Nentwich et al., 2013
23 36,084,349 GRCz10 DIRECT Busch-Nentwich et al., 2013
23 36,234,696 Zv9 DIRECT Busch-Nentwich et al., 2013
sa24386 23 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
23 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa37766 23 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
23 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse

GENETIC MAPPING PANELS: No data available
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
hoxc13a GENE 23 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13a, hoxc11a, hoxc10a, hoxc9a, hoxc8a, hoxc6a, hoxc5a, hoxc4a, hoxc3a, and hoxc1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG23.
hoxc3a GENE 23 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13a, hoxc11a, hoxc10a, hoxc9a, hoxc8a, hoxc6a, hoxc5a, hoxc4a, hoxc3a, and hoxc1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG23.
hoxc5a GENE 23 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13a, hoxc11a, hoxc10a, hoxc9a, hoxc8a, hoxc6a, hoxc5a, hoxc4a, hoxc3a, and hoxc1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG23.
hoxc10a GENE 23 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13a, hoxc11a, hoxc10a, hoxc9a, hoxc8a, hoxc6a, hoxc5a, hoxc4a, hoxc3a, and hoxc1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG23.
hoxc11a GENE 23 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13a, hoxc11a, hoxc10a, hoxc9a, hoxc8a, hoxc6a, hoxc5a, hoxc4a, hoxc3a, and hoxc1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG23.
hoxc4a GENE 23 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13a, hoxc11a, hoxc10a, hoxc9a, hoxc8a, hoxc6a, hoxc5a, hoxc4a, hoxc3a, and hoxc1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG23.
hoxc6a GENE 23 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13a, hoxc11a, hoxc10a, hoxc9a, hoxc8a, hoxc6a, hoxc5a, hoxc4a, hoxc3a, and hoxc1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG23.
hoxc8a GENE 23 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13a, hoxc11a, hoxc10a, hoxc9a, hoxc8a, hoxc6a, hoxc5a, hoxc4a, hoxc3a, and hoxc1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG23.
hoxc9a GENE 23 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13a, hoxc11a, hoxc10a, hoxc9a, hoxc8a, hoxc6a, hoxc5a, hoxc4a, hoxc3a, and hoxc1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG23.

OTHER MAPPING INFORMATION
Chr 23 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13a,  ...