ZFIN ID: ZDB-GENE-020829-1

ZFIN ID: ZDB-GENE-020829-1

Mapping Details

Gene Name:	SIM bHLH transcription factor 1a
Symbol:	sim1a

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	16	1,564,192 - 1,601,387	GRCz12tu
NCBI Map Viewer	16	1,564,192 - 1,601,387	GRCz12tu
Ensembl	16	1,470,418 - 1,503,023	GRCz11
NCBI Map Viewer	16	1,470,418 - 1,503,023	GRCz11
UCSC	16	-	GRCz11
Vega	16	1,446,530 - 1,479,135	GRCv10

Mapped Clones containing sim1a
DKEY-265C18	Chr: 16 Details
CH211-167H2	Chr: 16 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
sa2864	16	1,594,939	GRCz12tu	DIRECT		Sealy et al., 2025
	16	1,496,603	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	16	1,472,715	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	16	1,523,598	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa30996	16	1,574,777	GRCz12tu	DIRECT		Sealy et al., 2025
	16	1,476,461	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	16	1,452,573	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	16	1,503,456	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa36012	16	1,568,834	GRCz12tu	DIRECT		Sealy et al., 2025
	16	1,470,518	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	16	1,446,630	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	16	1,497,513	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa42640	16	1,574,777	GRCz12tu	DIRECT		Sealy et al., 2025
	16	1,476,461	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	16	1,452,573	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	16	1,503,456	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa42641	16	1,600,642	GRCz12tu	DIRECT		Sealy et al., 2025
	16	1,502,298	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	16	1,478,410	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	16	1,529,293	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa2864	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	16		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
sa30996	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	16		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
sa36012	16		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
sa42640	16		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
sa42641	16		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
zf3867Tg	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	16		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
16	7.2 cM	sim1	Heat Shock (HS)	Woods, Ian G.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

OTHER MAPPING INFORMATION: No data available