ZFIN ID: ZDB-GENE-040426-1446

Mapping Details

Gene Name: iroquois homeobox 2a
Symbol: irx2a
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 16 611,623 - 616,104 GRCz12tu
NCBI Map Viewer 16 611,623 - 616,104 GRCz12tu
Ensembl 16 558,688 - 563,235 GRCz11
NCBI Map Viewer 16 558,693 - 563,174 GRCz11
UCSC 16 - GRCz11
Vega 16 539,456 - 544,003 GRCv10
Mapped Clones containing irx2a
ZFOS-267C11 Chr: 16 Details
ZFOS-1179H2 Chr: 16 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
el831 16 561,793 - 561,798 GRCz11 DIRECT Farmer et al., 2021
sa10776 16 613,721 GRCz12tu DIRECT Sealy et al., 2025
16 560,791 GRCz11 DIRECT Busch-Nentwich et al., 2013
16 560,791 GRCz11 DIRECT Marra et al., 2019
16 541,559 GRCz10 DIRECT Busch-Nentwich et al., 2013
16 567,751 Zv9 DIRECT Busch-Nentwich et al., 2013
sa17696 16 614,788 GRCz12tu DIRECT Sealy et al., 2025
16 561,858 GRCz11 DIRECT Busch-Nentwich et al., 2013
16 542,626 GRCz10 DIRECT Busch-Nentwich et al., 2013
16 568,818 Zv9 DIRECT Busch-Nentwich et al., 2013
sa19128 16 612,805 GRCz12tu DIRECT Sealy et al., 2025
16 559,875 GRCz11 DIRECT Busch-Nentwich et al., 2013
16 540,643 GRCz10 DIRECT Busch-Nentwich et al., 2013
16 566,835 Zv9 DIRECT Busch-Nentwich et al., 2013
sa22736 16 614,531 GRCz12tu DIRECT Sealy et al., 2025
16 561,601 GRCz11 DIRECT Busch-Nentwich et al., 2013
16 542,369 GRCz10 DIRECT Busch-Nentwich et al., 2013
16 568,561 Zv9 DIRECT Busch-Nentwich et al., 2013
el831 16 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
16 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa10776 16 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
16 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa17696 16 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
16 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa19128 16 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
16 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa22736 16 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
16 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse

GENETIC MAPPING PANELS: No data available
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
z7233 SSLP 16 18.0 cR Dildrop et al., 2004 Dildrop and Ruther (2004, Dev. Genes Evol. 214(6):267-276) report mapping irx2a to LG16 on T51 panel.
irx4a GENE 16 Dildrop et al., 2004 Dildrop et al (Dev Genes Evol 214:267-276) used zebrafish genome sequence to  ...
irx1a GENE 16 Dildrop et al., 2004 Dildrop et al (Dev Genes Evol 214:267-276) used zebrafish genome sequence to  ...
lpcat1 GENE 16 Dildrop et al., 2004 Dildrop et al (Dev Genes Evol 214:267-276) used zebrafish genome sequence to  ...
nrsn1 GENE 16 Dildrop et al., 2004 Dildrop et al (Dev Genes Evol 214:267-276) used zebrafish genome sequence to  ...
z1642 SSLP 16 Feijoo et al., 2004 Feijoo et al. (2004 Dev. Genes Evol. 214(6):277-284) report mapping irx2a to LG16 using the T51 radiation hybrid panel.

OTHER MAPPING INFORMATION
Chr 16 Dildrop et al., 2004 Dildrop et al (Dev Genes Evol 214:267-276) used zebrafish genome sequence to map the irx1a, irx2a,  ...
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