ZFIN ID: ZDB-GENE-980526-26

Mapping Details

Gene Name:	muscle segment homeobox 1b
Symbol:	msx1b

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	1	52,665,799 - 52,668,171	GRCz12tu
NCBI Map Viewer	1	52,665,799 - 52,668,171	GRCz12tu
Ensembl	1	49,352,900 - 49,355,313	GRCz11
NCBI Map Viewer	1	49,352,935 - 49,355,307	GRCz11
UCSC	1	-	GRCz11
Vega	1	48,708,480 - 48,710,893	GRCv10

Mapped Clones containing msx1b
DKEYP-80C12	Chr: 1 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
sa39680	1	52,667,326	GRCz12tu	DIRECT		Sealy et al., 2025
	1	49,354,462	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	1	48,710,042	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	1	49,860,861	Zv9	DIRECT		Busch-Nentwich et al., 2013
	1		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	1		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	1		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	1		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
zko947a	1		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	1		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	1		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	1		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
zko947b	1		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	1		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	1		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	1		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
1	145.6 cM	msxb	Mother of Pearl (MOP)	Postlethwait, John H.	Data
1	443.28 cR	msxB	Loeb/NIH/5000/4000 (LN54)	Dawid, Igor B.	Data
1	455.11 cR	msxb	Loeb/NIH/5000/4000 (LN54)	Dawid, Igor B.	Data
1	6043.0 cR	msxb	Goodfellow T51 (T51)	Geisler, Robert	Data
1	74.9 cM	msxb	Heat Shock (HS)	Woods, Ian G.	Data
1	91.86 cM	msxb	Gates et al (GAT)	Talbot, William S.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
lef1	GENE	1		Phillips et al., 2006
Df(Chr01:lef1,msxb)x8	Feature	1		Phillips et al., 2006

Chr 1

Phillips et al., 2006

Markers Encoded by msx1b
fk04h02 Chr: 1 Details

Primer Sets:
Strain	Bandsize	Restriction Enzyme	Annealing Temperature [C]
SJD	421	MspI	36.0
Forward Primer	TATTTAACGGACCCGTGTCC
Reverse Primer	ACGGATAACCTCCGTGTCAG