ZFIN ID: ZDB-GENE-980526-399

Mapping Details

Gene Name:	paired box 9
Symbol:	pax9

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	17	40,104,733 - 40,112,408	GRCz12tu
NCBI Map Viewer	17	40,104,733 - 40,112,408	GRCz12tu
Ensembl	17	38,236,469 - 38,291,065	GRCz11
NCBI Map Viewer	17	38,236,469 - 38,244,117	GRCz11
UCSC	17	-	GRCz11
Vega	17	38,288,884 - 38,343,480	GRCv10

Mapped Clones containing pax9
DKEY-34N18	Chr: 17 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
el622	17	40,111,678 - 40,111,687	GRCz12tu	DIRECT		Paudel et al., 2025
zf3502	17	38,243,491 - 38,243,494	GRCz11	DIRECT		Pak et al., 2020
zf3503	17	38,243,493 - 38,243,505	GRCz11	DIRECT		Pak et al., 2020
zf3502	17		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
zf3503	17		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
17	117.2 cM	pax9	Mother of Pearl (MOP)	Postlethwait, John H.	Data
17	3505.0 cR	pax9	Goodfellow T51 (T51)	Geisler, Robert	Data
17	93.7 cM	pax9	Heat Shock (HS)	Woods, Ian G.	Data
17	75.35 cM	pax9	Gates et al (GAT)	Talbot, William S.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

Primer Sets:
Strain	Bandsize	Restriction Enzyme	Annealing Temperature [C]
SJD	453	NlaIII	36.0
Forward Primer	ACATCGGTGCACTTGGTCTGGTAG
Reverse Primer	TTTTGCCTGAATGAATGAATGCTC