ZFIN ID: ZDB-GENE-980526-532

ZFIN ID: ZDB-GENE-980526-532

Mapping Details

Gene Name:	homeobox C3a
Symbol:	hoxc3a

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	23	39,191,395 - 39,254,061	GRCz12tu
NCBI Map Viewer	23	39,191,395 - 39,254,061	GRCz12tu
Ensembl	23	36,087,219 - 36,149,371	GRCz11
NCBI Map Viewer	23	36,087,200 - 36,149,042	GRCz11
UCSC	23	-	GRCz11
Vega	23	35,988,416 - 36,050,568	GRCv10

Mapped Clones containing hoxc3a
DKEY-81P22	Chr: 23 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
ihb727	23	36,134,756 - 36,134,768	GRCz11	DIRECT		Zebrafish Nomenclature Committee
sa32461	23	39,250,173	GRCz12tu	DIRECT		Sealy et al., 2025
	23	36,145,165	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	23	36,046,362	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	23	36,196,709	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa37765	23	39,226,715	GRCz12tu	DIRECT		Sealy et al., 2025
	23	36,122,707	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	23	36,023,904	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	23	36,174,251	Zv9	DIRECT		Busch-Nentwich et al., 2013
ihb727	23		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	23		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	23		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	23		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
ihb728	23		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	23		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	23		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	23		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
nksagp022aGt	23		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	23		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	23		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	23		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
sa32461	23		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	23		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	23		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	23		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
sa37765	23		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	23		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	23		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	23		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
23	125.1 cM	hoxc3a	Mother of Pearl (MOP)	Postlethwait, John H.	Data
23	105.1 cM	hoxc3a	Heat Shock (HS)	Woods, Ian G.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Publication / Person	Comments
hoxc5a	GENE	23	Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13a, hoxc11a, hoxc10a, hoxc9a, hoxc8a, hoxc6a, hoxc5a, hoxc4a, hoxc3a, and hoxc1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG23.
hoxc10a	GENE	23	Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13a, hoxc11a, hoxc10a, hoxc9a, hoxc8a, hoxc6a, hoxc5a, hoxc4a, hoxc3a, and hoxc1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG23.
hoxc11a	GENE	23	Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13a, hoxc11a, hoxc10a, hoxc9a, hoxc8a, hoxc6a, hoxc5a, hoxc4a, hoxc3a, and hoxc1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG23.
hoxc4a	GENE	23	Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13a, hoxc11a, hoxc10a, hoxc9a, hoxc8a, hoxc6a, hoxc5a, hoxc4a, hoxc3a, and hoxc1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG23.
hoxc6a	GENE	23	Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13a, hoxc11a, hoxc10a, hoxc9a, hoxc8a, hoxc6a, hoxc5a, hoxc4a, hoxc3a, and hoxc1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG23.
hoxc8a	GENE	23	Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13a, hoxc11a, hoxc10a, hoxc9a, hoxc8a, hoxc6a, hoxc5a, hoxc4a, hoxc3a, and hoxc1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG23.
hoxc9a	GENE	23	Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13a, hoxc11a, hoxc10a, hoxc9a, hoxc8a, hoxc6a, hoxc5a, hoxc4a, hoxc3a, and hoxc1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG23.
hoxc13a	GENE	23	Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13a, hoxc11a, hoxc10a, hoxc9a, hoxc8a, hoxc6a, hoxc5a, hoxc4a, hoxc3a, and hoxc1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG23.
hoxc1a	GENE	23	Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13a, hoxc11a, hoxc10a, hoxc9a, hoxc8a, hoxc6a, hoxc5a, hoxc4a, hoxc3a, and hoxc1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG23.

Chr 23

Amores et al., 1998

Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13a, ...