ZFIN ID: ZDB-GENE-990415-109

ZFIN ID: ZDB-GENE-990415-109

Mapping Details

Gene Name:	homeobox B9a
Symbol:	hoxb9a

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	3	22,417,279 - 22,422,364	GRCz12tu
NCBI Map Viewer	3	22,417,279 - 22,422,364	GRCz12tu
Ensembl	3	23,677,351 - 23,682,436	GRCz11
NCBI Map Viewer	3	23,677,351 - 23,682,436	GRCz11
UCSC	3	-	GRCz11
Vega	3	23,546,803 - 23,551,888	GRCv10

Mapped Clones containing hoxb9a
CH211-72A16	Chr: 3 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
e2217	3	22,417,652 - 22,417,655	GRCz12tu	DIRECT		Moriyama et al., 2025
sa14877	3	22,417,833	GRCz12tu	DIRECT		Sealy et al., 2025
	3	23,677,905	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	3	23,547,357	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	3	23,969,146	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa17045	3	22,417,944	GRCz12tu	DIRECT		Sealy et al., 2025
	3	23,678,016	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	3	23,547,468	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	3	23,969,257	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa31325	3	22,420,568	GRCz12tu	DIRECT		Sealy et al., 2025
	3	23,680,640	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	3	23,550,092	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	3	23,971,881	Zv9	DIRECT		Busch-Nentwich et al., 2013
la015133Tg	3	23,972,323 - 23,972,333	Zv9	ZFIN_Zv9	BurgessLin
	2		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	3		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
sa14877	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	3		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	2		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
sa17045	3		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	2		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
sa31325	2		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	3		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
3	181.81 cR	hoxb9a	Loeb/NIH/5000/4000 (LN54)	Johnson, Stephen L.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Publication / Person	Comments
hoxb8a	GENE	3	Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report eve1, hoxb10a, hoxb9a, hoxb8a, hoxb7a, hoxb6a, hoxb5a, hoxb4a, hoxb3a, hoxb2a, and hoxb1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG03.
hoxb5a	GENE	3	Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report eve1, hoxb10a, hoxb9a, hoxb8a, hoxb7a, hoxb6a, hoxb5a, hoxb4a, hoxb3a, hoxb2a, and hoxb1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG03.
hoxb4a	GENE	3	Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report eve1, hoxb10a, hoxb9a, hoxb8a, hoxb7a, hoxb6a, hoxb5a, hoxb4a, hoxb3a, hoxb2a, and hoxb1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG03.
eve1	GENE	3	Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report eve1, hoxb10a, hoxb9a, hoxb8a, hoxb7a, hoxb6a, hoxb5a, hoxb4a, hoxb3a, hoxb2a, and hoxb1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG03.
hoxb2a	GENE	3	Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report eve1, hoxb10a, hoxb9a, hoxb8a, hoxb7a, hoxb6a, hoxb5a, hoxb4a, hoxb3a, hoxb2a, and hoxb1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG03.
hoxb6a	GENE	3	Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report eve1, hoxb10a, hoxb9a, hoxb8a, hoxb7a, hoxb6a, hoxb5a, hoxb4a, hoxb3a, hoxb2a, and hoxb1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG03.
hoxb1a	GENE	3	Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report eve1, hoxb10a, hoxb9a, hoxb8a, hoxb7a, hoxb6a, hoxb5a, hoxb4a, hoxb3a, hoxb2a, and hoxb1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG03.
hoxb10a	GENE	3	Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report eve1, hoxb10a, hoxb9a, hoxb8a, hoxb7a, hoxb6a, hoxb5a, hoxb4a, hoxb3a, hoxb2a, and hoxb1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG03.
hoxb7a	GENE	3	Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report eve1, hoxb10a, hoxb9a, hoxb8a, hoxb7a, hoxb6a, hoxb5a, hoxb4a, hoxb3a, hoxb2a, and hoxb1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG03.
hoxb3a	GENE	3	Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report eve1, hoxb10a, hoxb9a, hoxb8a, hoxb7a, hoxb6a, hoxb5a, hoxb4a, hoxb3a, hoxb2a, and hoxb1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG03.
dlx4a	GENE	3	Sumanas et al., 2001	Sumanas et al (Genesis 30:114-118, 2001) mapped the fzd2 gene to the marker ...
z22516	SSLP	3	Sumanas et al., 2001	Sumanas et al (Genesis 30:114-118, 2001) mapped the fzd2 gene to the marker ...
fzd2	GENE	3	Sumanas et al., 2001	Sumanas et al (Genesis 30:114-118, 2001) mapped the fzd2 gene to the marker ...

Chr 3	Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report eve1, ...
Chr 3	Sumanas et al., 2001	Sumanas et al (Genesis 30:114-118, 2001) mapped the fzd2 gene to the marker Z22516, between the ...

Markers Encoded by hoxb9a
fc06b03 Chr: 2 Details