ZFIN ID: ZDB-GENE-990415-201

ZFIN ID: ZDB-GENE-990415-201

Mapping Details

Gene Name:	paired box 7a
Symbol:	pax7a

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	11	43,582,698 - 43,718,594	GRCz12tu
NCBI Map Viewer	11	43,582,698 - 43,718,594	GRCz12tu
Ensembl	11	41,242,644 - 41,372,948	GRCz11
NCBI Map Viewer	11	41,243,065 - 41,378,029	GRCz11
UCSC	11	-	GRCz11
UCSC	11	-	GRCz11
Vega	11	40,652,295 - 40,787,221	GRCv10

Mapped Clones containing pax7a
CH73-132O13	Chr: 11 Details
CH211-168O24	Chr: 11 Details
CH73-220M10	Chr: 11 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
oz19	11	41,244,666 - 41,244,672	GRCz11	DIRECT		Berberoglu et al., 2017
oz23	11	41,244,666 - 41,244,668	GRCz11	DIRECT		Berberoglu et al., 2017
sa14696	11	43,646,513	GRCz12tu	DIRECT		Sealy et al., 2025
	11	41,306,150	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	11	40,715,351	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	11	42,478,275	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa35152	11	43,704,232	GRCz12tu	DIRECT		Sealy et al., 2025
	11	41,363,666	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	11	40,772,867	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	11	42,420,759	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa41908	11	43,648,233	GRCz12tu	DIRECT		Sealy et al., 2025
	11	41,307,870	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	11	40,717,071	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	11	42,476,555	Zv9	DIRECT		Busch-Nentwich et al., 2013
umu3	11	41,243,457 - 41,243,460	GRCz11	DIRECT		Nord et al., 2016
oz19	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	11		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
oz23	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	11		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
sa14696	11		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
sa35152	11		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
sa41908	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	11		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
umu3	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	11		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
11	143.8 cM	pax7D	Mother of Pearl (MOP)	Postlethwait, John H.	Data
11	2499.0 cR	pax7e	Goodfellow T51 (T51)	Geisler, Robert	Data
11	89.4 cM	pax7a	Heat Shock (HS)	Woods, Ian G.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
s1018tEt	Feature	11		Scott et al., 2007	Scott et al. report insertion of the enhancer trap into the 4th intron of pax7.

Chr 11

Scott et al., 2007

Scott et al. report insertion of the enhancer trap into the 4th intron of pax7.