ZFIN ID: ZDB-GENE-990604-40

Mapping Details

Gene Name:	opsin 1 (cone pigments), short-wave-sensitive 2
Symbol:	opn1sw2

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	11	27,531,874 - 27,547,813	GRCz12tu
NCBI Map Viewer	11	27,531,874 - 27,547,813	GRCz12tu
Ensembl	11	25,459,697 - 25,475,403	GRCz11
NCBI Map Viewer	11	25,472,758 - 25,475,403	GRCz11
UCSC	11	-	GRCz11
Vega	11	25,222,081 - 25,237,787	GRCv10

Mapped Clones containing opn1sw2
DKEY-245F22	Chr: 11 Details
DKEY-13A21	Chr: 11 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
sa38844	11	27,545,358	GRCz12tu	DIRECT		Sealy et al., 2025
	11	25,472,948	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	11	25,235,332	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	11	26,406,507	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa41842	11	27,546,303	GRCz12tu	DIRECT		Sealy et al., 2025
	11	25,473,893	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	11	25,236,277	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	11	26,407,452	Zv9	DIRECT		Busch-Nentwich et al., 2013
sou21	11	27,545,388 - 27,545,401	GRCz12tu	DIRECT		Zhang et al., 2025
zf3924	11	25,473,187 - 25,473,188	GRCz11	DIRECT		Wang et al., 2023
sa38844	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
sa41842	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
zf3924	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse

GENETIC MAPPING PANELS: No data available

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
opn1lw1	GENE	unknown		Chinen et al., 2003	Chinen A et al (Genetics 163: 668-675, 2003) mapped the opn1sw2, opn1lw1 and ...
cxxc1b	GENE	unknown		Chinen et al., 2003	Chinen A et al (Genetics 163: 668-675, 2003) mapped the opn1sw2, opn1lw1 and ...

Chr unknown

Chinen et al., 2003

Chinen A et al (Genetics 163: 668-675, 2003) mapped the opn1sw2, opn1lw1 and opn1lw2 genes to ...