ZFIN is now using GRCz12tu for Genomic Data
Gene
rcl1
- ID
- ZDB-GENE-040930-11
- Name
- RNA terminal phosphate cyclase-like 1
- Symbol
- rcl1 Nomenclature History
- Previous Names
-
- zgc:109921
- Type
- protein_coding_gene
- Location
- Chr: 5 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable RNA endonuclease activity. Acts upstream of or within liver development; pancreas development; and rRNA processing. Located in nucleolus. Is expressed in several structures, including alar plate midbrain region; digestive system; head; optic vesicle; and swim bladder. Orthologous to human RCL1 (RNA terminal phosphate cyclase like 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 8 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- MGC:109921 (12 images)
Wild Type Expression Summary
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Conserved_site | IPR020719 | RNA 3'-terminal phosphate cyclase-like, conserved site |
| Domain | IPR013791 | RNA 3'-terminal phosphate cyclase, insert domain |
| Domain | IPR023797 | RNA 3'-terminal phosphate cyclase domain |
| Family | IPR000228 | RNA 3'-terminal phosphate cyclase |
| Family | IPR016443 | RNA 3'-terminal phosphate cyclase type 2 |
| Homologous_superfamily | IPR013792 | RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta |
| Homologous_superfamily | IPR036553 | RNA 3'-terminal phosphate cyclase, insert domain superfamily |
| Homologous_superfamily | IPR037136 | RNA 3'-terminal phosphate cyclase domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | RNA 3'-terminal phosphate cyclase | RNA 3'-terminal phosphate cyclase domain | RNA 3'-terminal phosphate cyclase domain superfamily | RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta | RNA 3'-terminal phosphate cyclase, insert domain | RNA 3'-terminal phosphate cyclase, insert domain superfamily | RNA 3'-terminal phosphate cyclase-like, conserved site | RNA 3'-terminal phosphate cyclase type 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M9Q8F5 | InterPro | 421 | ||||||||
| UniProtKB:Q6DRI3 | InterPro | 367 |
- Genome Browsers
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers