lrrn1

ID

ZDB-GENE-071126-1

Name

leucine rich repeat neuronal 1

Symbol

lrrn1 Nomenclature History

Previous Names

None

Type

protein_coding_gene

Location

Chr: 6 Mapping Details/Browsers

Genome Assembly

GRCz12tu

Annotation Status

Current

Description

Predicted to enable signaling receptor activity. Acts upstream of or within olfactory nerve formation and olfactory placode morphogenesis. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in basal plate midbrain region; hindbrain neural keel; nervous system; neural plate; and somite. Orthologous to human LRRN1 (leucine rich repeat neuronal 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

14 figures from 3 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:7159467 (22 images)
IMAGE:7160133 (15 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: 1 Figure from Garaffo et al., 2013
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With lrrn1 Human Ortholog

No data available

Associated With lrrn1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000483	Cysteine-rich flanking region, C-terminal
Domain	IPR003598	Immunoglobulin subtype 2
Domain	IPR003599	Immunoglobulin domain subtype
Domain	IPR003961	Fibronectin type III
Domain	IPR007110	Immunoglobulin-like domain
Domain	IPR013098	Immunoglobulin I-set
Homologous_superfamily	IPR013783	Immunoglobulin-like fold
Homologous_superfamily	IPR032675	Leucine-rich repeat domain superfamily
Homologous_superfamily	IPR036116	Fibronectin type III superfamily
Homologous_superfamily	IPR036179	Immunoglobulin-like domain superfamily
Repeat	IPR001611	Leucine-rich repeat
Repeat	IPR003591	Leucine-rich repeat, typical subtype

Domain Details Per Protein

Protein	Additional Resources	Length
UniProtKB:A9JRH0	InterPro	717
UniProtKB:A0AC58JRV6	InterPro	717
UniProtKB:A0AC58JRW1	InterPro	717
UniProtKB:A0AC58JRW2	InterPro	717
UniProtKB:A0AC58JRW5	InterPro	717
UniProtKB:A0AC58JRW6	InterPro	717
UniProtKB:A0AC58JRW7	InterPro	717
UniProtKB:A0AC58JRW8	InterPro	717
UniProtKB:A0AC58JRX0	InterPro	717
UniProtKB:A0AC58JRX1	InterPro	717
UniProtKB:A0AC58JRX2	InterPro	717
UniProtKB:A0AC58JRX3	InterPro	717
UniProtKB:A0AC58JRX6	InterPro	717
UniProtKB:A0AC58JRX7	InterPro	717
UniProtKB:A0AC58JRX8	InterPro	717
UniProtKB:A0AC58JRX9	InterPro	717
UniProtKB:A0AC58JRY0	InterPro	717
UniProtKB:A0AC58JRY1	InterPro	717
UniProtKB:A0AC58JRY2	InterPro	717
UniProtKB:A0AC58JRY3	InterPro	717
UniProtKB:A0AC58JRY4	InterPro	717
UniProtKB:A0AC58JRY5	InterPro	717
UniProtKB:A0AC58JRY6	InterPro	717
UniProtKB:A0AC58JRY7	InterPro	717
UniProtKB:A0AC58JRY8	InterPro	717
UniProtKB:A0AC58JRY9	InterPro	717
UniProtKB:A0AC58JRZ1	InterPro	717
UniProtKB:A0AC58JRZ3	InterPro	717
UniProtKB:A0AC58JRZ4	InterPro	717
UniProtKB:A0AC58JRZ5	InterPro	717
UniProtKB:A0AC58JRZ7	InterPro	717
UniProtKB:A0AC58JRZ8	InterPro	717
UniProtKB:A0AC58JRZ9	InterPro	717
UniProtKB:A0AC58JS00	InterPro	717
UniProtKB:A0AC58JS01	InterPro	717
UniProtKB:A0AC58JS02	InterPro	717
UniProtKB:A0AC58JS03	InterPro	717
UniProtKB:A0AC58JS04	InterPro	717
UniProtKB:A0AC58JS07	InterPro	717
UniProtKB:A0AC58JS09	InterPro	717
UniProtKB:A0AC58JS10	InterPro	717
UniProtKB:A0AC58JS11	InterPro	717
UniProtKB:A0AC58JS14	InterPro	717
UniProtKB:A0AC58JS19	InterPro	717
UniProtKB:A0AC58JS20	InterPro	717
UniProtKB:A0AC58JS22	InterPro	717
UniProtKB:A0AC58JS28	InterPro	717