ZFIN is now using GRCz12tu for Genomic Data
Gene
sox19a
- ID
- ZDB-GENE-980526-102
- Name
- SRY-box transcription factor 19a
- Symbol
- sox19a Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 5 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Contributes to DNA-binding transcription factor activity. Acts upstream of or within positive regulation of DNA-binding transcription factor activity. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in several structures, including blastomere; central nervous system; neural rod; presumptive diencephalon; and presumptive structure. Orthologous to human SOX15 (SRY-box transcription factor 15).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 26 figures from 12 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- cb799 (20 images)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | High mobility group box domain | High mobility group box domain superfamily | SRY-related HMG-box transcription factor-like | Transcription factor SOX |
|---|---|---|---|---|---|---|
| UniProtKB:P47792 | InterPro | 297 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
sox19a-201
(1)
|
Ensembl | 2,170 nt | ||
| ncRNA |
sox19a-002
(1)
|
Ensembl | 629 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers