ZFIN ID: ZDB-GENE-980526-196

Mapping Details

Gene Name: patched 1
Symbol: ptch1
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 8 32,043,114 - 32,148,341 GRCz12tu
NCBI Map Viewer 8 32,043,114 - 32,148,341 GRCz12tu
Ensembl 8 29,986,265 - 30,066,179 GRCz11
NCBI Map Viewer 8 29,962,635 - 30,068,277 GRCz11
UCSC 8 - GRCz11
Vega 8 29,977,033 - 30,056,947 GRCv10
Vega 8 29,953,792 - 29,957,053 GRCv10
Mapped Clones containing ptch1
CH211-248D20 Chr: 8 Details
DKEY-72L19 Chr: 8 Details
DKEY-185L9 Chr: 8 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
sa784 8 32,143,361 GRCz12tu DIRECT Sealy et al., 2025
8 30,063,297 GRCz11 DIRECT Busch-Nentwich et al., 2013
8 30,054,065 GRCz10 DIRECT Busch-Nentwich et al., 2013
8 30,911,339 Zv9 DIRECT Busch-Nentwich et al., 2013
sa7141 8 32,066,791 GRCz12tu DIRECT Sealy et al., 2025
8 29,986,723 GRCz11 DIRECT Busch-Nentwich et al., 2013
8 29,977,491 GRCz10 DIRECT Busch-Nentwich et al., 2013
8 30,834,765 Zv9 DIRECT Busch-Nentwich et al., 2013
sa9464 8 32,102,334 GRCz12tu DIRECT Sealy et al., 2025
8 30,022,270 GRCz11 DIRECT Busch-Nentwich et al., 2013
8 30,013,038 GRCz10 DIRECT Busch-Nentwich et al., 2013
8 30,870,312 Zv9 DIRECT Busch-Nentwich et al., 2013
sa17883 8 32,097,021 GRCz12tu DIRECT Sealy et al., 2025
8 30,016,957 GRCz11 DIRECT Busch-Nentwich et al., 2013
8 30,007,725 GRCz10 DIRECT Busch-Nentwich et al., 2013
8 30,864,999 Zv9 DIRECT Busch-Nentwich et al., 2013
sa21322 8 32,101,935 GRCz12tu DIRECT Sealy et al., 2025
8 30,021,871 GRCz11 DIRECT Busch-Nentwich et al., 2013
8 30,012,639 GRCz10 DIRECT Busch-Nentwich et al., 2013
8 30,869,913 Zv9 DIRECT Busch-Nentwich et al., 2013
sa21323 8 32,127,607 GRCz12tu DIRECT Sealy et al., 2025
8 30,047,543 GRCz11 DIRECT Busch-Nentwich et al., 2013
8 30,038,311 GRCz10 DIRECT Busch-Nentwich et al., 2013
8 30,895,585 Zv9 DIRECT Busch-Nentwich et al., 2013
sa34430 8 32,146,089 GRCz12tu DIRECT Sealy et al., 2025
8 30,066,025 GRCz11 DIRECT Busch-Nentwich et al., 2013
8 30,056,793 GRCz10 DIRECT Busch-Nentwich et al., 2013
8 30,914,067 Zv9 DIRECT Busch-Nentwich et al., 2013
tj222 8 30,016,921 GRCz11 DIRECT ZFIN Curated Data
la016340Tg 8 30,818,461 - 30,818,471 Zv9 ZFIN_Zv9 BurgessLin
tj222 8 GRCz11 GENERAL_LOAD load data [singleton]
la016340Tg 8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
8 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa784 8 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa7141 8 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa9464 8 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa17883 8 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa21322 8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
8 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa21323 8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
8 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa34430 8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
8 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
tj222 8 GRCz11 OTHER_MAPPING linkagesDirectMem2
8 GRCz11 OTHER_MAPPING linkagesDirectMem1
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
8 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
tq236 8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
8 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
8 80.1 cM ptc2 Mother of Pearl (MOP) Postlethwait, John H. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
aopep GENE 8 Titus et al., 2006 Titus et al (Gene 371, 211-223) mapped the fancc gene to LG8 using the HS  ...
fancc GENE 8 Titus et al., 2006 Titus et al (Gene 371, 211-223) mapped the fancc gene to LG8 using the HS  ...

OTHER MAPPING INFORMATION
Chr 8 Titus et al., 2006 Titus et al (Gene 371, 211-223) mapped the fancc gene to LG8 using the HS mapping panel. BLAST  ...
Genomic Feature tj222 is an allele of ptch1
Marker Type Chr Distance Publication / Person Comments
z11948 SSLP 8 Koudijs et al., 2005
Genomic Feature tj222 is an allele of ptch1
Chr 8 Koudijs et al., 2005
Genomic Feature sa9464 is an allele of ptch1
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