ZFIN ID: ZDB-GENE-000823-2

Mapping Details

Gene Name:	homeobox A9b
Symbol:	hoxa9b

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	16	22,266,779 - 22,269,000	GRCz12tu
NCBI Map Viewer	16	22,266,779 - 22,269,000	GRCz12tu
Ensembl	16	20,915,319 - 20,917,584	GRCz11
NCBI Map Viewer	16	20,915,319 - 20,917,582	GRCz11
UCSC	16	-	GRCz11
Vega	16	21,109,500 - 21,111,765	GRCv10

Mapped Clones containing hoxa9b
DKEY-45E15	Chr: 16 Details
BUSM1-31B14	Chr: 16 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
sa6422	16	22,267,011	GRCz12tu	DIRECT		Sealy et al., 2025
	16	20,915,593	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	16	21,109,774	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	16	23,000,023	Zv9	DIRECT		Busch-Nentwich et al., 2013
sud165a	16	20,915,595 - 20,915,598	GRCz11	DIRECT		Adachi et al., 2024
la027699Tg	16	23,001,806 - 23,001,816	Zv9	ZFIN_Zv9	BurgessLin
ihb430	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
ihb431	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
la027699Tg	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
sa6422	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
sud165a	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage

GENETIC MAPPING PANELS: No data available

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
hoxa13b	GENE	16		Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxa13b, hoxa11b, hoxa10b, hoxa9b, and hoxa2b are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG16.
hoxa11b	GENE	16		Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxa13b, hoxa11b, hoxa10b, hoxa9b, and hoxa2b are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG16.
hoxa10b	GENE	16		Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxa13b, hoxa11b, hoxa10b, hoxa9b, and hoxa2b are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG16.
hoxa2b	GENE	16		Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxa13b, hoxa11b, hoxa10b, hoxa9b, and hoxa2b are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG16.
mir196d	MIRNAG	16		Yekta et al., 2004	Yekta et al. (2005, Science 304(5670):594-596) mapped mirn196b.1b between hoxa9b and hoxa10b.
hoxa10b	GENE	16		Yekta et al., 2004	Yekta et al. (2005, Science 304(5670):594-596) mapped mirn196b.1b between hoxa9b and hoxa10b.

Chr 16	Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxa13b, ...
Chr 16	Yekta et al., 2004	Yekta et al. (2005, Science 304(5670):594-596) mapped mirn196b.1b between hoxa9b and ...